PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529651.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARF
Protein Properties Length: 638aa    MW: 71455.8 Da    PI: 6.5739
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529651.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.3e-24119218197
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f kvlt sd++++g +++ +k+a+e+     + +++ +++l+ +d +g++W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++
  XP_010529651.1 119 FSKVLTASDTSTHGGFSVLRKHATEClppldMTQPTPTQELVTRDIHGQEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENG 211
                     88****************************9666667789************************************************..44999 PP

                     ..EEEEE CS
              B3  91 elvvkvf 97 
                     el+v+v+
  XP_010529651.1 212 ELRVGVR 218
                     99**997 PP

2Auxin_resp110.91.3e-36245324183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t++ F+v+Y+Pr+  s+F+v+++k+++al++k+svGmRfkm+fe+eds+err+sGtvvgv+d++p +W +SkWr+L+
  XP_010529651.1 245 ASHAIHTQTRFTVYYKPRT--SQFIVSLNKYVEALNNKFSVGMRFKMRFEGEDSPERRFSGTVVGVNDCSP-HWIDSKWRCLE 324
                     789***************6..9*************************************************.*********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-37112248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-40113234IPR015300DNA-binding pseudobarrel domain
CDDcd100179.54E-21117219No hitNo description
SMARTSM010192.8E-21119221IPR003340B3 DNA binding domain
PfamPF023621.3E-21119218IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449119221IPR003340B3 DNA binding domain
PfamPF065072.7E-33245323IPR010525Auxin response factor
PfamPF023091.4E-7503561IPR033389AUX/IAA domain
SuperFamilySSF542771.08E-13519601No hitNo description
PROSITE profilePS5174526.62525606IPR000270PB1 domain
PfamPF023093.6E-6574606IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MANRGDDGGG GYLYEELWKL CAGPLVDVPR PEENVYYFPQ GHMEQLEAST NQDLNKMKPL  60
LNLPSKILCR VMNVTLQAEK ETDEVYAQIT LIPIGTQADE STCRDPCPPA PQRSTIHSFS  120
KVLTASDTST HGGFSVLRKH ATECLPPLDM TQPTPTQELV TRDIHGQEWK FKHIFRGQPR  180
RHLLTTGWST FVTSKRLVAG DSFVFLRGEN GELRVGVRCA ARQQSSMPSS VISSQSMHLG  240
VLATASHAIH TQTRFTVYYK PRTSQFIVSL NKYVEALNNK FSVGMRFKMR FEGEDSPERR  300
FSGTVVGVND CSPHWIDSKW RCLEVQWDEP SSILRPDRVS PWEIEPFVPS SANIAQSVAP  360
KNKRPRQVNE VSSLDLGSPA PNLWSSTLTQ SQSHVFAQSC ITSQMSGSQH CYRDATEDTK  420
SVSDWLMNRY SIPPMAKLNN EQLGFPVEEK KPETVTSYKL FGIDLMSNST PATPVEKTTN  480
ALPINISSPT VEAGSEQKSE VSKDSKEKTQ VSPKEVQSKQ NSSSRSCIKV QMKGVAVGRA  540
VDLTVLEGYY QLFDELEKLF DIRGELRPRN LWEIVYTDDE GDMMLVGDDP WTEFCKMAKR  600
IFICSKEDVK KMNTGDKLPI LSDGGEAASL PSSDNMWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-16353479355Auxin response factor 1
4ldw_A1e-16353479355Auxin response factor 1
4ldw_B1e-16353479355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529651.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794741e-31JN979474.1 Brassica rapa subsp. pekinensis auxin response factor 9 (ARF9-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529651.10.0PREDICTED: auxin response factor 9-like isoform X4
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLV4P5Z30.0V4P5Z3_EUTSA; Auxin response factor
STRINGXP_010529646.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9