PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010529651.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ARF | ||||||||
Protein Properties | Length: 638aa MW: 71455.8 Da PI: 6.5739 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.3e-24 | 119 | 218 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f kvlt sd++++g +++ +k+a+e+ + +++ +++l+ +d +g++W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + +++ XP_010529651.1 119 FSKVLTASDTSTHGGFSVLRKHATEClppldMTQPTPTQELVTRDIHGQEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENG 211 88****************************9666667789************************************************..44999 PP ..EEEEE CS B3 91 elvvkvf 97 el+v+v+ XP_010529651.1 212 ELRVGVR 218 99**997 PP | |||||||
2 | Auxin_resp | 110.9 | 1.3e-36 | 245 | 324 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+v+Y+Pr+ s+F+v+++k+++al++k+svGmRfkm+fe+eds+err+sGtvvgv+d++p +W +SkWr+L+ XP_010529651.1 245 ASHAIHTQTRFTVYYKPRT--SQFIVSLNKYVEALNNKFSVGMRFKMRFEGEDSPERRFSGTVVGVNDCSP-HWIDSKWRCLE 324 789***************6..9*************************************************.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.27E-37 | 112 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-40 | 113 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.54E-21 | 117 | 219 | No hit | No description |
SMART | SM01019 | 2.8E-21 | 119 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-21 | 119 | 218 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.449 | 119 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.7E-33 | 245 | 323 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.4E-7 | 503 | 561 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.08E-13 | 519 | 601 | No hit | No description |
PROSITE profile | PS51745 | 26.62 | 525 | 606 | IPR000270 | PB1 domain |
Pfam | PF02309 | 3.6E-6 | 574 | 606 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 638 aa Download sequence Send to blast |
MANRGDDGGG GYLYEELWKL CAGPLVDVPR PEENVYYFPQ GHMEQLEAST NQDLNKMKPL 60 LNLPSKILCR VMNVTLQAEK ETDEVYAQIT LIPIGTQADE STCRDPCPPA PQRSTIHSFS 120 KVLTASDTST HGGFSVLRKH ATECLPPLDM TQPTPTQELV TRDIHGQEWK FKHIFRGQPR 180 RHLLTTGWST FVTSKRLVAG DSFVFLRGEN GELRVGVRCA ARQQSSMPSS VISSQSMHLG 240 VLATASHAIH TQTRFTVYYK PRTSQFIVSL NKYVEALNNK FSVGMRFKMR FEGEDSPERR 300 FSGTVVGVND CSPHWIDSKW RCLEVQWDEP SSILRPDRVS PWEIEPFVPS SANIAQSVAP 360 KNKRPRQVNE VSSLDLGSPA PNLWSSTLTQ SQSHVFAQSC ITSQMSGSQH CYRDATEDTK 420 SVSDWLMNRY SIPPMAKLNN EQLGFPVEEK KPETVTSYKL FGIDLMSNST PATPVEKTTN 480 ALPINISSPT VEAGSEQKSE VSKDSKEKTQ VSPKEVQSKQ NSSSRSCIKV QMKGVAVGRA 540 VDLTVLEGYY QLFDELEKLF DIRGELRPRN LWEIVYTDDE GDMMLVGDDP WTEFCKMAKR 600 IFICSKEDVK KMNTGDKLPI LSDGGEAASL PSSDNMWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-163 | 5 | 347 | 9 | 355 | Auxin response factor 1 |
4ldw_A | 1e-163 | 5 | 347 | 9 | 355 | Auxin response factor 1 |
4ldw_B | 1e-163 | 5 | 347 | 9 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010529651.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979474 | 1e-31 | JN979474.1 Brassica rapa subsp. pekinensis auxin response factor 9 (ARF9-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010529651.1 | 0.0 | PREDICTED: auxin response factor 9-like isoform X4 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | V4P5Z3 | 0.0 | V4P5Z3_EUTSA; Auxin response factor | ||||
STRING | XP_010529646.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |