PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529650.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARF
Protein Properties Length: 643aa    MW: 71984.4 Da    PI: 6.5739
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529650.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.4e-24124223197
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f kvlt sd++++g +++ +k+a+e+     + +++ +++l+ +d +g++W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++
  XP_010529650.1 124 FSKVLTASDTSTHGGFSVLRKHATEClppldMTQPTPTQELVTRDIHGQEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENG 216
                     88****************************9666667789************************************************..44999 PP

                     ..EEEEE CS
              B3  91 elvvkvf 97 
                     el+v+v+
  XP_010529650.1 217 ELRVGVR 223
                     99**997 PP
2Auxin_resp110.91.3e-36250329183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t++ F+v+Y+Pr+  s+F+v+++k+++al++k+svGmRfkm+fe+eds+err+sGtvvgv+d++p +W +SkWr+L+
  XP_010529650.1 250 ASHAIHTQTRFTVYYKPRT--SQFIVSLNKYVEALNNKFSVGMRFKMRFEGEDSPERRFSGTVVGVNDCSP-HWIDSKWRCLE 329
                     789***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-37117253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-40118239IPR015300DNA-binding pseudobarrel domain
CDDcd100179.72E-21122224No hitNo description
PROSITE profilePS5086312.449124226IPR003340B3 DNA binding domain
PfamPF023621.3E-21124223IPR003340B3 DNA binding domain
SMARTSM010192.8E-21124226IPR003340B3 DNA binding domain
PfamPF065072.7E-33250328IPR010525Auxin response factor
PfamPF023091.4E-7508566IPR033389AUX/IAA domain
SuperFamilySSF542771.08E-13524606No hitNo description
PROSITE profilePS5174526.62530611IPR000270PB1 domain
PfamPF023093.7E-6579611IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MANRGVFGQP DDGGGGYLYE ELWKLCAGPL VDVPRPEENV YYFPQGHMEQ LEASTNQDLN  60
KMKPLLNLPS KILCRVMNVT LQAEKETDEV YAQITLIPIG TQADESTCRD PCPPAPQRST  120
IHSFSKVLTA SDTSTHGGFS VLRKHATECL PPLDMTQPTP TQELVTRDIH GQEWKFKHIF  180
RGQPRRHLLT TGWSTFVTSK RLVAGDSFVF LRGENGELRV GVRCAARQQS SMPSSVISSQ  240
SMHLGVLATA SHAIHTQTRF TVYYKPRTSQ FIVSLNKYVE ALNNKFSVGM RFKMRFEGED  300
SPERRFSGTV VGVNDCSPHW IDSKWRCLEV QWDEPSSILR PDRVSPWEIE PFVPSSANIA  360
QSVAPKNKRP RQVNEVSSLD LGSPAPNLWS STLTQSQSHV FAQSCITSQM SGSQHCYRDA  420
TEDTKSVSDW LMNRYSIPPM AKLNNEQLGF PVEEKKPETV TSYKLFGIDL MSNSTPATPV  480
EKTTNALPIN ISSPTVEAGS EQKSEVSKDS KEKTQVSPKE VQSKQNSSSR SCIKVQMKGV  540
AVGRAVDLTV LEGYYQLFDE LEKLFDIRGE LRPRNLWEIV YTDDEGDMML VGDDPWTEFC  600
KMAKRIFICS KEDVKKMNTG DKLPILSDGG EAASLPSSDN MWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-16483529355Auxin response factor 1
4ldw_A1e-16483529355Auxin response factor 1
4ldw_B1e-16483529355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794741e-31JN979474.1 Brassica rapa subsp. pekinensis auxin response factor 9 (ARF9-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529650.10.0PREDICTED: auxin response factor 9-like isoform X3
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLV4P5Z30.0V4P5Z3_EUTSA; Auxin response factor
STRINGXP_010529646.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9