PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529649.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARF
Protein Properties Length: 650aa    MW: 72614.1 Da    PI: 6.5739
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529649.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.5e-24131230197
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f kvlt sd++++g +++ +k+a+e+     + +++ +++l+ +d +g++W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++
  XP_010529649.1 131 FSKVLTASDTSTHGGFSVLRKHATEClppldMTQPTPTQELVTRDIHGQEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENG 223
                     88****************************9666667789************************************************..44999 PP

                     ..EEEEE CS
              B3  91 elvvkvf 97 
                     el+v+v+
  XP_010529649.1 224 ELRVGVR 230
                     99**997 PP
2Auxin_resp110.91.3e-36257336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t++ F+v+Y+Pr+  s+F+v+++k+++al++k+svGmRfkm+fe+eds+err+sGtvvgv+d++p +W +SkWr+L+
  XP_010529649.1 257 ASHAIHTQTRFTVYYKPRT--SQFIVSLNKYVEALNNKFSVGMRFKMRFEGEDSPERRFSGTVVGVNDCSP-HWIDSKWRCLE 336
                     789***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-37124260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-40125246IPR015300DNA-binding pseudobarrel domain
CDDcd100179.98E-21129231No hitNo description
PfamPF023621.4E-21131230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449131233IPR003340B3 DNA binding domain
SMARTSM010192.8E-21131233IPR003340B3 DNA binding domain
PfamPF065072.8E-33257335IPR010525Auxin response factor
PfamPF023091.4E-7515573IPR033389AUX/IAA domain
SuperFamilySSF542771.08E-13531613No hitNo description
PROSITE profilePS5174526.62537618IPR000270PB1 domain
PfamPF023093.4E-6586618IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MANRGGAFIQ PVSFPGGDDG GGGYLYEELW KLCAGPLVDV PRPEENVYYF PQGHMEQLEA  60
STNQDLNKMK PLLNLPSKIL CRVMNVTLQA EKETDEVYAQ ITLIPIGTQA DESTCRDPCP  120
PAPQRSTIHS FSKVLTASDT STHGGFSVLR KHATECLPPL DMTQPTPTQE LVTRDIHGQE  180
WKFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDSFVFLRG ENGELRVGVR CAARQQSSMP  240
SSVISSQSMH LGVLATASHA IHTQTRFTVY YKPRTSQFIV SLNKYVEALN NKFSVGMRFK  300
MRFEGEDSPE RRFSGTVVGV NDCSPHWIDS KWRCLEVQWD EPSSILRPDR VSPWEIEPFV  360
PSSANIAQSV APKNKRPRQV NEVSSLDLGS PAPNLWSSTL TQSQSHVFAQ SCITSQMSGS  420
QHCYRDATED TKSVSDWLMN RYSIPPMAKL NNEQLGFPVE EKKPETVTSY KLFGIDLMSN  480
STPATPVEKT TNALPINISS PTVEAGSEQK SEVSKDSKEK TQVSPKEVQS KQNSSSRSCI  540
KVQMKGVAVG RAVDLTVLEG YYQLFDELEK LFDIRGELRP RNLWEIVYTD DEGDMMLVGD  600
DPWTEFCKMA KRIFICSKED VKKMNTGDKL PILSDGGEAA SLPSSDNMWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-163173599355Auxin response factor 1
4ldw_A1e-163173599355Auxin response factor 1
4ldw_B1e-163173599355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529649.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794741e-31JN979474.1 Brassica rapa subsp. pekinensis auxin response factor 9 (ARF9-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529649.10.0PREDICTED: auxin response factor 9-like isoform X2
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLV4P5Z30.0V4P5Z3_EUTSA; Auxin response factor
STRINGXP_010529646.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9