PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010529646.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ARF | ||||||||
Protein Properties | Length: 655aa MW: 73142.8 Da PI: 6.5739 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.6e-24 | 136 | 235 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f kvlt sd++++g +++ +k+a+e+ + +++ +++l+ +d +g++W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + +++ XP_010529646.1 136 FSKVLTASDTSTHGGFSVLRKHATEClppldMTQPTPTQELVTRDIHGQEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENG 228 88****************************9666667789************************************************..44999 PP ..EEEEE CS B3 91 elvvkvf 97 el+v+v+ XP_010529646.1 229 ELRVGVR 235 99**997 PP | |||||||
2 | Auxin_resp | 110.9 | 1.3e-36 | 262 | 341 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+v+Y+Pr+ s+F+v+++k+++al++k+svGmRfkm+fe+eds+err+sGtvvgv+d++p +W +SkWr+L+ XP_010529646.1 262 ASHAIHTQTRFTVYYKPRT--SQFIVSLNKYVEALNNKFSVGMRFKMRFEGEDSPERRFSGTVVGVNDCSP-HWIDSKWRCLE 341 789***************6..9*************************************************.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.4E-37 | 129 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-40 | 130 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.01E-20 | 134 | 236 | No hit | No description |
PROSITE profile | PS50863 | 12.449 | 136 | 238 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-21 | 136 | 238 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-21 | 136 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-33 | 262 | 340 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.6E-7 | 521 | 578 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.08E-13 | 536 | 618 | No hit | No description |
PROSITE profile | PS51745 | 26.62 | 542 | 623 | IPR000270 | PB1 domain |
Pfam | PF02309 | 3.4E-6 | 591 | 623 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 655 aa Download sequence Send to blast |
MANRGGAFIQ PVSFPGGVFG QPDDGGGGYL YEELWKLCAG PLVDVPRPEE NVYYFPQGHM 60 EQLEASTNQD LNKMKPLLNL PSKILCRVMN VTLQAEKETD EVYAQITLIP IGTQADESTC 120 RDPCPPAPQR STIHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQP TPTQELVTRD 180 IHGQEWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDSF VFLRGENGEL RVGVRCAARQ 240 QSSMPSSVIS SQSMHLGVLA TASHAIHTQT RFTVYYKPRT SQFIVSLNKY VEALNNKFSV 300 GMRFKMRFEG EDSPERRFSG TVVGVNDCSP HWIDSKWRCL EVQWDEPSSI LRPDRVSPWE 360 IEPFVPSSAN IAQSVAPKNK RPRQVNEVSS LDLGSPAPNL WSSTLTQSQS HVFAQSCITS 420 QMSGSQHCYR DATEDTKSVS DWLMNRYSIP PMAKLNNEQL GFPVEEKKPE TVTSYKLFGI 480 DLMSNSTPAT PVEKTTNALP INISSPTVEA GSEQKSEVSK DSKEKTQVSP KEVQSKQNSS 540 SRSCIKVQMK GVAVGRAVDL TVLEGYYQLF DELEKLFDIR GELRPRNLWE IVYTDDEGDM 600 MLVGDDPWTE FCKMAKRIFI CSKEDVKKMN TGDKLPILSD GGEAASLPSS DNMWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-164 | 15 | 364 | 11 | 355 | Auxin response factor 1 |
4ldw_A | 1e-164 | 15 | 364 | 11 | 355 | Auxin response factor 1 |
4ldw_B | 1e-164 | 15 | 364 | 11 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010529646.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979474 | 1e-31 | JN979474.1 Brassica rapa subsp. pekinensis auxin response factor 9 (ARF9-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010529646.1 | 0.0 | PREDICTED: auxin response factor 9-like isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | V4P5Z3 | 0.0 | V4P5Z3_EUTSA; Auxin response factor | ||||
STRING | XP_010529646.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |