PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529633.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 310aa    MW: 34082.8 Da    PI: 4.786
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529633.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.18.9e-29140200259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDg++WrKYGqK++  s+fprsYYrCt++   +C+++k+v+rs+ dp v+e+tY+g+H+++
  XP_010529633.1 140 DDGFSWRKYGQKDILASRFPRSYYRCTYRntqNCWATKQVQRSDGDPAVFEVTYRGTHTCS 200
                     8***************************98899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-27136201IPR003657WRKY domain
SuperFamilySSF1182901.96E-25138200IPR003657WRKY domain
SMARTSM007748.8E-40139201IPR003657WRKY domain
PROSITE profilePS5081120.702140197IPR003657WRKY domain
PfamPF031061.5E-26140199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MLNWDTTTLV SELIHGMEAA KQLQSHIGES PSPSPESFPP TTETNESLVL RIVSSYEKAL  60
LMLNWAGPPP VQPVTPPAAA VIPVLNSGGK AESPASINGS PRSEELNQDY NFNPKKRKTM  120
PKWTEKVRIS PERGFEGPQD DGFSWRKYGQ KDILASRFPR SYYRCTYRNT QNCWATKQVQ  180
RSDGDPAVFE VTYRGTHTCS QAIPPPASPE TQDAKSNKAT GNYQNDPLHS LGTNLGVDAF  240
SFPAATLFYD DSDFGFCHVG GSDPSDFPGL MMSSANTSTG SSPIFDVDFQ FDPTVEIDTG  300
FTSFFTRVDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20140199968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529633.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019057191.11e-177PREDICTED: probable WRKY transcription factor 41
SwissprotQ8H0Y81e-108WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLA0A078JI121e-116A0A078JI12_BRANA; BnaCnng45760D protein
TrEMBLA0A0D3AT351e-116A0A0D3AT35_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DR481e-116A0A3P6DR48_BRAOL; Uncharacterized protein
STRINGXP_010529633.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-105WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]