PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529630.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 314aa    MW: 34470.5 Da    PI: 5.5165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529630.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-19114163255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  XP_010529630.1 114 KFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 163
                     89*******.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-30113171IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-21114171IPR016177DNA-binding domain
CDDcd000181.79E-31114171No hitNo description
PROSITE profilePS5103223.657114171IPR001471AP2/ERF domain
PfamPF008472.0E-12114163IPR001471AP2/ERF domain
SMARTSM003801.2E-37114177IPR001471AP2/ERF domain
PRINTSPR003673.2E-10115126IPR001471AP2/ERF domain
PRINTSPR003673.2E-10137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
METEKKIVLP RIRFKEHKIN STTTLPTNFN FNPKPRILRI SVTDPDATDS SSDEDAEHSE  60
IPKRRRVKKF VNEVVLESLS VKTGGGCERT RKRRKTAGRD SGKAEAPAVA AERKFRGVRQ  120
RPWGKWAAEI RDPLRRVRLW LGTYDTAEEA AMVYDNAAIQ LRGPDALTNF ATPPPRAMAE  180
TEKPPPGNAD ATASTSTSVG ICSPVSVLRS PFSVEESSKP SPTVVEPSTT VTESFSDFSA  240
TLFQNDDVFD FRSSVPDFFG GDIFGEDLFS CTGPGLNLGF EFGSGFGSGF SSWHVEDHFQ  300
DIGDLFGSDP LLAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18110170162ATERF1
3gcc_A1e-18110170162ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16168PKRRRVKK
26266KRRRV
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529630.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529630.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
SwissprotQ9SUQ21e-117CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBLA0A078IEQ21e-117A0A078IEQ2_BRANA; BnaA01g13420D protein
TrEMBLA0A398ALG71e-117A0A398ALG7_BRACM; Uncharacterized protein
TrEMBLA0A3P5Z4D31e-117A0A3P5Z4D3_BRACM; Uncharacterized protein
TrEMBLM4DB701e-117M4DB70_BRARP; Uncharacterized protein
STRINGXP_010529631.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-90cytokinin response factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ckurshumova W,Berleth T
    Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
    Plant Signal Behav, 2015. 10(7): p. e993293
    [PMID:26098229]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  5. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]