PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010529432.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | GRAS | ||||||||
Protein Properties | Length: 662aa MW: 72322.8 Da PI: 5.5762 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 408.9 | 4.8e-125 | 292 | 655 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +lLl+cAeavs ++le+a++lL ++s+l++p+g++ qR+aayf eA++arl++s+ ++y+alp++ ++++s + ++a+++f+ +sP++kfsh+ XP_010529432.1 292 LTLLLQCAEAVSIDNLEEANKLLLEISQLSTPYGTSAQRVAAYFSEAMSARLVNSCLGIYAALPSRWIPQTHSLKMVSAFQVFNGISPLVKFSHF 386 579******************************************************************************************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 taNqaI ea+e+ee vHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g s e+l++tg+rL++fA++lg+pfef + +a++ +l++ XP_010529432.1 387 TANQAIQEAFEREESVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGT----SMEALQATGKRLSDFADKLGLPFEFCP-LAEKAGNLDP 476 *****************************************************....***************************.5999****** PP GRAS 192 eeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++L++++ +Ea+aV++ h+l+d ++s ++ +L+l+++l+Pkvv++veq+++h ++sFl rf+ea++yysalfdsl a++++eseer++ XP_010529432.1 477 DRLNLSTgkREAIAVHWLQ--HSLYDVTGSDTH----TLWLLQRLEPKVVTIVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGASYGEESEERNV 564 ***9999889*******99..999988888777....**********************.899******************************** PP GRAS 285 vErellgreivnvvacegaerrerhe.tlekWrerleeaGF.kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 vE++ll+rei+nv+a g +r+ e ++e+Wre+l+++GF k ++ls +aa+qa lll +++sdgy++ +++gsl lgWkd +L+++SaW XP_010529432.1 565 VEQQLLSREIRNVLAVGGPSRNGGGEvRFESWREKLKQCGFfKGISLSGNAATQATLLLGMFPSDGYTLVDDNGSLKLGWKDLSLLTASAW 655 ********************99765438************7378*********************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.372 | 265 | 636 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-122 | 292 | 655 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0051457 | Biological Process | maintenance of protein location in nucleus | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MADSGKATGG DRCGGGTQSQ GPPPKMVRKR TASEINDSDY DHSSRLHRRN SHLLESDTNT 60 NTNTNIMSSV PPLPQPPLPP QLSVCGFSLC PLFPSANPIQ AMDQDAWIDA VIRGLIHSST 120 TVSIPQLIQN VRDIIFPCNP NFPSANPIQA MDQDAWIDAV IRGLIHSSTT VSIPQLIQNV 180 RDIIFPCNPN LGALLEYRLR SLILLDPPDP QPSSYPLPLH QISADPSPSR PPPPPQEKQT 240 ADERENSSSD AAETVISTAG ASTTATAVVA AMRERKEEMK RQKQDEEGLH LLTLLLQCAE 300 AVSIDNLEEA NKLLLEISQL STPYGTSAQR VAAYFSEAMS ARLVNSCLGI YAALPSRWIP 360 QTHSLKMVSA FQVFNGISPL VKFSHFTANQ AIQEAFEREE SVHIIDLDIM QGLQWPGLFH 420 ILASRPGGPP HVRLTGLGTS MEALQATGKR LSDFADKLGL PFEFCPLAEK AGNLDPDRLN 480 LSTGKREAIA VHWLQHSLYD VTGSDTHTLW LLQRLEPKVV TIVEQDLSHA GSFLGRFVEA 540 IHYYSALFDS LGASYGEESE ERNVVEQQLL SREIRNVLAV GGPSRNGGGE VRFESWREKL 600 KQCGFFKGIS LSGNAATQAT LLLGMFPSDG YTLVDDNGSL KLGWKDLSLL TASAWAPFPH 660 PS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 0.0 | 275 | 657 | 3 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Also required for normal shoot gravitropism. Regulates the radial organization of the shoot axial organs. Binds to the promoter of MGP, NUC, RLK and SCL3. Restricts SHR movment and sequesters it into the nucleus of the endodermis. {ECO:0000269|PubMed:10631180, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15142972, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:22921914, ECO:0000269|PubMed:24302889, ECO:0000269|PubMed:8819871, ECO:0000269|PubMed:9375406, ECO:0000269|PubMed:9670559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010529432.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by SHR and by itself. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:11565032, ECO:0000269|PubMed:15314023}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010529432.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: protein SCARECROW | ||||
Swissprot | Q9M384 | 0.0 | SCR_ARATH; Protein SCARECROW | ||||
TrEMBL | D7LUR7 | 0.0 | D7LUR7_ARALL; Uncharacterized protein | ||||
STRING | XP_010529432.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8164 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 0.0 | GRAS family protein |