PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010529407.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | B3 | ||||||||
Protein Properties | Length: 790aa MW: 87432.4 Da PI: 7.5991 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.1 | 7.9e-19 | 331 | 430 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlvlpkk+ae++ +++++e+ l+++d++g++W +++++ +++s++yvl+ G + +L++gD+v+F++ + e++ XP_010529407.1 331 FEKMLSASDAGRIGRLVLPKKCAEAYlpQISQPEGLPLKVQDSTGKEWIFQFRFwpNNNSRMYVLE-GVTACIQNMRLQAGDTVTFSRLD-PEGK 423 89**************************777778889***************9989999999***9.********************765.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 l +++++ XP_010529407.1 424 LIMGFRK 430 7777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.59E-19 | 328 | 430 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-29 | 328 | 439 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.53E-21 | 329 | 430 | No hit | No description |
Pfam | PF02362 | 8.7E-16 | 331 | 430 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.293 | 331 | 432 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-17 | 331 | 432 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 790 aa Download sequence Send to blast |
MSSSSLQTSK LCFNSECSEF KPERFRPAWR FRNGDFADLC DRCASAYEEG RFCDVYHLKS 60 SGWRTCESCG KRIHCGCIVS ASAFMLLDAG GVECLACTRR KASLGLSFSR PPPSFFFQPP 120 IAEKFKDLSV KDWSSSAGSG QVNCCQVPNS LGPCVLQFDF HNHGVQHATG QPTSRDRASS 180 MGRHELEDSS GKHMSESSKI HASSILENGK GTNCEDHPSP AINSYKVLNP LKDDPCRSRL 240 AFPGPVATPN DTNGHIRLIG PHLWQTSPLN HSHNDLNSGV DSPCESESRN MTLNVDSQLK 300 HRVLPRYWPR FTNQDLQNLS TDSKSVITPL FEKMLSASDA GRIGRLVLPK KCAEAYLPQI 360 SQPEGLPLKV QDSTGKEWIF QFRFWPNNNS RMYVLEGVTA CIQNMRLQAG DTVTFSRLDP 420 EGKLIMGFRK ASVAQSSDQE NDSIKSGRDT CSTGDAEPAD PRPLSKAHKS AYIAKEALAV 480 KSSSRKKKKS SMMILKSKRR RVEKEDFIEL KLTWEEAQGL LQPPPNSAPS IIVIEGFEFE 540 EYEDAPIIGR PTVFATDDTG FRTGCSAAQE LASEQVDNIH PPHNSDCSKV LKASKEESHD 600 METIEEIGEG LSMSSKTTTR HPRHRPGCTC IVCIQPPSGK GPKHEPGCTC AVCQMVKRRF 660 RTLMLRREKK QTEKKDNKRK ESLLLSSDEE LNQCQDHDDK TRGNSSSTPP FKGQIDLNTQ 720 PEKDEESSPL GSDSTAMRRL PCNVAMEEAC FDQLKLSSEC SHGISVTNQI SPKDGVKPVA 780 NTVVSDSNTA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 8e-58 | 309 | 434 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 8e-58 | 309 | 434 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 8e-58 | 309 | 434 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 8e-58 | 309 | 434 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 8e-58 | 309 | 434 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 8e-58 | 309 | 434 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 1e-57 | 309 | 434 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 486 | 500 | KKKSSMMILKSKRRR |
2 | 497 | 501 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in plant development. {ECO:0000269|PubMed:17158584}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010529407.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010529407.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VAL3 isoform X3 | ||||
Swissprot | O65420 | 0.0 | VAL3_ARATH; B3 domain-containing transcription factor VAL3 | ||||
TrEMBL | A0A067G7Y2 | 0.0 | A0A067G7Y2_CITSI; Uncharacterized protein | ||||
TrEMBL | V4U907 | 0.0 | V4U907_9ROSI; Uncharacterized protein | ||||
STRING | XP_010529404.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21550.1 | 0.0 | VP1/ABI3-like 3 |