PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529404.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 806aa    MW: 89161.4 Da    PI: 7.7656
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.1e-19331430198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpkk+ae++  +++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +  e++
  XP_010529404.1 331 FEKMLSASDAGRIGRLVLPKKCAEAYlpQISQPEGLPLKVQDSTGKEWIFQFRFwpNNNSRMYVLE-GVTACIQNMRLQAGDTVTFSRLD-PEGK 423
                     89**************************777778889***************9989999999***9.********************765.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     l +++++
  XP_010529404.1 424 LIMGFRK 430
                     7777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-28328433IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-19328430IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-21329430No hitNo description
PfamPF023629.0E-16331430IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293331432IPR003340B3 DNA binding domain
SMARTSM010191.1E-17331432IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MSSSSLQTSK LCFNSECSEF KPERFRPAWR FRNGDFADLC DRCASAYEEG RFCDVYHLKS  60
SGWRTCESCG KRIHCGCIVS ASAFMLLDAG GVECLACTRR KASLGLSFSR PPPSFFFQPP  120
IAEKFKDLSV KDWSSSAGSG QVNCCQVPNS LGPCVLQFDF HNHGVQHATG QPTSRDRASS  180
MGRHELEDSS GKHMSESSKI HASSILENGK GTNCEDHPSP AINSYKVLNP LKDDPCRSRL  240
AFPGPVATPN DTNGHIRLIG PHLWQTSPLN HSHNDLNSGV DSPCESESRN MTLNVDSQLK  300
HRVLPRYWPR FTNQDLQNLS TDSKSVITPL FEKMLSASDA GRIGRLVLPK KCAEAYLPQI  360
SQPEGLPLKV QDSTGKEWIF QFRFWPNNNS RMYVLEGVTA CIQNMRLQAG DTVTFSRLDP  420
EGKLIMGFRK ASVAQSSDQV PGTSLYSDIR RLAAKENDSI KSGRDTCSTG DAEPADPRPL  480
SKAHKSAYIA KEALAVKSSS RKKKKSSMMI LKSKRRRVEK EDFIELKLTW EEAQGLLQPP  540
PNSAPSIIVI EGFEFEEYED APIIGRPTVF ATDDTGFRTG CSAAQELASE QVDNIHPPHN  600
SDCSKVLKAS KEESHDMETI EEIGEGLSMS SKTTTRHPRH RPGCTCIVCI QPPSGKGPKH  660
EPGCTCAVCQ MVKRRFRTLM LRREKKQTEK KDNKRKESLL LSSDEELNQC QDHDDKTRGN  720
SSSTPPFKGQ IDLNTQPEKD EESSPLGSDS TAMRRLPCNV AMEEACFDQL KLSSECSHGI  780
SVTNQISPKD GVKPVANTVV SDSNTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-583094341126B3 domain-containing transcription repressor VAL1
5yzz_C2e-583094341126B3 domain-containing transcription repressor VAL1
5z00_C2e-583094341126B3 domain-containing transcription repressor VAL1
5z00_G2e-583094341126B3 domain-containing transcription repressor VAL1
5z00_K2e-583094341126B3 domain-containing transcription repressor VAL1
5z00_M2e-583094341126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1502516KKKSSMMILKSKRRR
2513517KRRRV
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529404.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529405.10.0PREDICTED: B3 domain-containing transcription factor VAL3 isoform X1
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLA0A067G7Y20.0A0A067G7Y2_CITSI; Uncharacterized protein
TrEMBLV4U9070.0V4U907_9ROSI; Uncharacterized protein
STRINGXP_010529404.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3