PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529258.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 316aa    MW: 34971.7 Da    PI: 9.2918
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529258.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.9e-08255299143
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      +  WT  Ed  l++a k ++++   +W++Ia+ ++ g+t   c  r
   XP_010529258.1 255 KETWTNGEDIALLNALKAFPKEvamRWEKIAAAVP-GKTKAACMKR 299
                      578********************************.*******887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.262159200IPR017877Myb-like domain
SMARTSM007179.4E-4163216IPR001005SANT/Myb domain
SuperFamilySSF466896.24E-6166203IPR009057Homeodomain-like
CDDcd001679.94E-4167200No hitNo description
PROSITE profilePS512949.944250308IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-8251306IPR009057Homeodomain-like
SuperFamilySSF466894.76E-10253302IPR009057Homeodomain-like
SMARTSM007179.4E-7254306IPR001005SANT/Myb domain
PfamPF002491.7E-6255299IPR001005SANT/Myb domain
CDDcd001677.54E-6257299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEFYDEDRPR LVFQSRPSPS PSSSVAENPK NLSKVFTSIS VSVALLLFCL SVFYLRSEPF  60
KSILLWLSLS LLAGPFAPSS LTGGQIRVGH GRILEPEPVD EQPAETERES RRKTVNKRSK  120
GLNPDFPPEI AYPVPEIADS LSRKVDQNEI PHSAGTGSAS DVEIRDWTEE DIEFLKKQLT  180
KHPAGKPGRW EAVAAAFGGR HRLENVIKKA KELGEKKAND SNDYAQFLKN RKPLDGRMAE  240
EKAEDPATGD GEVKKETWTN GEDIALLNAL KAFPKEVAMR WEKIAAAVPG KTKAACMKRV  300
SELKKDFRSS KPSAGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529258.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529258.10.0PREDICTED: dnaJ homolog subfamily C member 2
SwissprotQ9ASQ21e-116MAMYB_ARATH; Transcription factor MAMYB
TrEMBLE4MYE51e-138E4MYE5_EUTHA; mRNA, clone: RTFL01-50-P19
STRINGXP_010529258.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126921011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.11e-114MYB_related family protein