PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529105.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 1432aa    MW: 157652 Da    PI: 6.4676
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529105.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.5e-09702743346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +W  eE e+++d  +++G++ +++Ia+++   +t  +c+++++k
   XP_010529105.1 702 PWGSEEREIFLDKLAMYGKD-FRKIASHLE-QKTTADCIDFYYK 743
                      8*****************99.*********.9**********98 PP
2Myb_DNA-binding25.53.1e-08915957347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT eE   + +++ ++G++ ++ I++++g +R+  qck ++ k+
   XP_010529105.1 915 HWTDEERSAFMQGFLLYGKN-FAMISQCIG-TRSQDQCKVFFSKV 957
                      5*****************99.*********.********998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.64E-13686746IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-5694744IPR009057Homeodomain-like
PROSITE profilePS5129316.153698749IPR017884SANT domain
SMARTSM007174.8E-8699747IPR001005SANT/Myb domain
PfamPF002494.5E-7702743IPR001005SANT/Myb domain
CDDcd001673.45E-6702744No hitNo description
PROSITE profilePS5129311.072911962IPR017884SANT domain
SMARTSM007173.5E-6912960IPR001005SANT/Myb domain
PfamPF002499.9E-6915956IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-10915962IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-5915956IPR009057Homeodomain-like
CDDcd001679.16E-5916957No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1432 aa     Download sequence    Send to blast
MNNGSTRILG RLPDMNNDCL SADERPSNAS DSRTAISKLS VLAHPTQQNI EISPVKTPTG  60
NWDQNFSNQR LASPSHPHSV SGSLYELSYL LDKHDNEVCS SGRQCHDVRG DNTSLCPSNF  120
HVDLQLTHGQ LLSKDQKDDK VHGVNGIHIV EKLGKESCLG SINWKHPLWT HSGRFASRGF  180
GFSHSSSSKS FGAVDTIEQK TEVLPKIVSV TESTSRDAAS YFTSSCLPEE TNSRKKPRLG  240
WGEGLAKYEK KKVDVNLCED GNTMLANSTG EAYSLLCKSP TMVNASDFGS PATPSSVACS  300
SSPGTRDKPS CMAAKAVSDA SNLCRSPSPV FNYQLERIPF NLEDAGNISM ENLSCLLSEL  360
LRTDDSGPGD SCSIQWNVMN KVLAWKVDVL KVLELTESEI DLLENKRRAL KFEAGSLCPY  420
QIGPVEQGAP CVAERPEGAV HNAVPAKVSV DATGEGVERS QDTVDIPSIK TATSSTDVDM  480
SSFAIGSTTI NDDTVQLSSG CCSIASEEDV SVILVSNRKF AHEASEVFNM LLPRQYSWSN  540
DTRCSTMCQD EVDPHIKQTI AVKRRIMRVK EKILVLQFKA FQLSWKRDMH QLAISKYNAK  600
SHKKCESNLY IKNGAIQKLP QSVRLKFYSP APGRESPPPT AEFLNFMGKL LLGFQHKRCR  660
DILRMPAMIL GEKEKVISRF ISSNGLIEDP CAVEKERAMI NPWGSEEREI FLDKLAMYGK  720
DFRKIASHLE QKTTADCIDF YYKNHKSDCF VKIKKKLANG KERKCNFMLA PRKKWKREMG  780
AASLDILGAV SVIAGNASKV TSTRQMSSKR ITPGGSRCLH HSDNSSEGCF YNFDLHDKQT  840
ISADGLSGGD GSLSTGLISS CLRSSADPEE RCRKYPKFDS TLKISQLSHA THCDNSSDED  900
DTCSEESFEE TSPVHWTDEE RSAFMQGFLL YGKNFAMISQ CIGTRSQDQC KVFFSKVRKC  960
LGLELIQLQS GNASTSASVD NSNEGGGSEM EVPCALEGSS VMCNDDLCAK MDVNLPNLPF  1020
NVNRDGADHL GSVKLKSDLD RSEQENGSAC LGWKDGVEVV DTNASPVHMD CSDSVPKTVE  1080
SQCPAVEKTE SDQLLCTETN QGVLVSAVVS PQPPSSNATV LANLILKSFT ERLREYSDSV  1140
KETANGTRDP PLIPAEAASS SGFSLPECLH HVPIEMCVEG VHLPQENSSS HSETGSPNAF  1200
DVHVMERHNL DARFFSNAHL SFGEKHQFYG QNSLQDVHVS NTTEASRIPW SSFMQDPSLN  1260
KRSKSDVIVT TTLGTGEDFS LNRCSSLTSN STSAKQRRLS QKESRTVNTR RHSRSLSDTE  1320
RPYKNEDLRL FGTIVTSHEN ERNTHHLHES IRQDLQNVPI ASYGIWDGNR IRTGFTALQY  1380
PEAFAVQDVS STSEVQVGSS REIQPDGLSV YTRRKLNGST EIPVFGTQID GD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C2e-14660750493NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D2e-14660750493NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529105.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529105.10.0PREDICTED: uncharacterized protein LOC104806084 isoform X3
TrEMBLR0HEB90.0R0HEB9_9BRAS; Uncharacterized protein
STRINGXP_010529103.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.10.0MYB family protein