PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010529104.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 1512aa MW: 166958 Da PI: 6.6059 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.4 | 3.7e-09 | 782 | 823 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W eE e+++d +++G++ +++Ia+++ +t +c+++++k XP_010529104.1 782 PWGSEEREIFLDKLAMYGKD-FRKIASHLE-QKTTADCIDFYYK 823 8*****************99.*********.9**********98 PP | |||||||
2 | Myb_DNA-binding | 25.4 | 3.2e-08 | 995 | 1037 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE + +++ ++G++ ++ I++++g +R+ qck ++ k+ XP_010529104.1 995 HWTDEERSAFMQGFLLYGKN-FAMISQCIG-TRSQDQCKVFFSKV 1037 5*****************99.*********.********998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.01E-13 | 766 | 826 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 774 | 824 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 16.153 | 778 | 829 | IPR017884 | SANT domain |
SMART | SM00717 | 4.8E-8 | 779 | 827 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.67E-6 | 782 | 824 | No hit | No description |
Pfam | PF00249 | 4.8E-7 | 782 | 823 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 11.072 | 991 | 1042 | IPR017884 | SANT domain |
SMART | SM00717 | 3.5E-6 | 992 | 1040 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-10 | 995 | 1042 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-5 | 995 | 1036 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-5 | 995 | 1036 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.74E-5 | 996 | 1037 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1512 aa Download sequence Send to blast |
MFHASFPVGI LETSVGLMGG RHQFASETDH GHVSSRSSTR IFEDDNYRPS ASRGDWRYNK 60 NTRDGRVSFN QKEWKHHTWE MNNGSTRILG RLPDMNNDCL SADERPSNAS DSRTAISKLS 120 VLAHPTQQNI EISPVKTPTG NWDQNFSNQR LASPSHPHSV SGSLYELSYL LDKHDNEVCS 180 SGRQCHDVRG DNTSLCPSNF HVDLQLTHGQ LLSKDQKDDK VHGVNGIHIV EKLGKESCLG 240 SINWKHPLWT HSGRFASRGF GFSHSSSSKS FGAVDTIEQK TEVLPKIVSV TESTSRDAAS 300 YFTSSCLPEE TNSRKKPRLG WGEGLAKYEK KKVDVNLCED GNTMLANSTG EAYSLLCKSP 360 TMVNASDFGS PATPSSVACS SSPGTRDKPS CMAAKAVSDA SNLCRSPSPV FNYQLERIPF 420 NLEDAGNISM ENLSCLLSEL LRTDDSGPGD SCSIQWNVMN KVLAWKVDVL KVLELTESEI 480 DLLENKRRAL KFEAGSLCPY QIGPVEQGAP CVAERPEGAV HNAVPAKVSV DATGEGVERS 540 QDTVDIPSIK TATSSTDVDM SSFAIGSTTI NDDTVQLSSG CCSIASEEDV SVILVSNRKF 600 AHEASEVFNM LLPRQYSWSN DTRCSTMCQD EVDPHIKQTI AVKRRIMRVK EKILVLQFKA 660 FQLSWKRDMH QLAISKYNAK SHKKCESNLY IKNGAIQKLP QSVRLKFYSP APGRESPPPT 720 AEFLNFMGKL LLGFQHKRCR DILRMPAMIL GEKEKVISRF ISSNGLIEDP CAVEKERAMI 780 NPWGSEEREI FLDKLAMYGK DFRKIASHLE QKTTADCIDF YYKNHKSDCF VKIKKKLANG 840 KERKCNFMLA PRKKWKREMG AASLDILGAV SVIAGNASKV TSTRQMSSKR ITPGGSRCLH 900 HSDNSSEGCF YNFDLHDKQT ISADGLSGGD GSLSTGLISS CLRSSADPEE RCRKYPKFDS 960 TLKISQLSHA THCDNSSDED DTCSEESFEE TSPVHWTDEE RSAFMQGFLL YGKNFAMISQ 1020 CIGTRSQDQC KVFFSKVRKC LGLELIQLQS GNASTSASVD NSNEGGGSEM EVPCALEGSS 1080 VMCNDDLCAK MDVNLPNLPF NVNRDGADHL GSVKLKSDLD RSEQENGSAC LGWKDGVEVV 1140 DTNASPVHMD CSDSVPKTVE SQCPAVEKTE SDQLLCTETN QGVLVSAVVS PQPPSSNATV 1200 LANLILKSFT ERLREYSDSV KETANGTRDP PLIPAEAASS SGFSLPECLH HVPIEMCVEG 1260 VHLPQENSSS HSETGSPNAF DVHVMERHNL DARFFSNAHL SFGEKHQFYG QNSLQDVHVS 1320 NTTEASRIPW SSFMQDPSLN KRSKSDVIVT TTLGTGEDFS LNRCSSLTSN STSAKQRRLS 1380 QKESRTVNTR RHSRSLSDTE RPYKNEDLRL FGTIVTSHEN ERNTHHLHES IRQDLQNVPI 1440 ASYGIWDGNR IRTGFTALQY PEAFAVQDVS STSEVQVGSS REIQPDGLSV YTRRKLNGST 1500 EIPVFGTQID GD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 2e-14 | 740 | 830 | 4 | 93 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 2e-14 | 740 | 830 | 4 | 93 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010529104.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010529104.1 | 0.0 | PREDICTED: uncharacterized protein LOC104806084 isoform X2 | ||||
TrEMBL | R0HEB9 | 0.0 | R0HEB9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010529103.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 0.0 | MYB family protein |