PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529104.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 1512aa    MW: 166958 Da    PI: 6.6059
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529104.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.7e-09782823346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +W  eE e+++d  +++G++ +++Ia+++   +t  +c+++++k
   XP_010529104.1 782 PWGSEEREIFLDKLAMYGKD-FRKIASHLE-QKTTADCIDFYYK 823
                      8*****************99.*********.9**********98 PP
2Myb_DNA-binding25.43.2e-089951037347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47  
                        WT eE   + +++ ++G++ ++ I++++g +R+  qck ++ k+
   XP_010529104.1  995 HWTDEERSAFMQGFLLYGKN-FAMISQCIG-TRSQDQCKVFFSKV 1037
                       5*****************99.*********.********998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-13766826IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-5774824IPR009057Homeodomain-like
PROSITE profilePS5129316.153778829IPR017884SANT domain
SMARTSM007174.8E-8779827IPR001005SANT/Myb domain
CDDcd001673.67E-6782824No hitNo description
PfamPF002494.8E-7782823IPR001005SANT/Myb domain
PROSITE profilePS5129311.0729911042IPR017884SANT domain
SMARTSM007173.5E-69921040IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-109951042IPR009057Homeodomain-like
PfamPF002491.1E-59951036IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-59951036IPR009057Homeodomain-like
CDDcd001679.74E-59961037No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1512 aa     Download sequence    Send to blast
MFHASFPVGI LETSVGLMGG RHQFASETDH GHVSSRSSTR IFEDDNYRPS ASRGDWRYNK  60
NTRDGRVSFN QKEWKHHTWE MNNGSTRILG RLPDMNNDCL SADERPSNAS DSRTAISKLS  120
VLAHPTQQNI EISPVKTPTG NWDQNFSNQR LASPSHPHSV SGSLYELSYL LDKHDNEVCS  180
SGRQCHDVRG DNTSLCPSNF HVDLQLTHGQ LLSKDQKDDK VHGVNGIHIV EKLGKESCLG  240
SINWKHPLWT HSGRFASRGF GFSHSSSSKS FGAVDTIEQK TEVLPKIVSV TESTSRDAAS  300
YFTSSCLPEE TNSRKKPRLG WGEGLAKYEK KKVDVNLCED GNTMLANSTG EAYSLLCKSP  360
TMVNASDFGS PATPSSVACS SSPGTRDKPS CMAAKAVSDA SNLCRSPSPV FNYQLERIPF  420
NLEDAGNISM ENLSCLLSEL LRTDDSGPGD SCSIQWNVMN KVLAWKVDVL KVLELTESEI  480
DLLENKRRAL KFEAGSLCPY QIGPVEQGAP CVAERPEGAV HNAVPAKVSV DATGEGVERS  540
QDTVDIPSIK TATSSTDVDM SSFAIGSTTI NDDTVQLSSG CCSIASEEDV SVILVSNRKF  600
AHEASEVFNM LLPRQYSWSN DTRCSTMCQD EVDPHIKQTI AVKRRIMRVK EKILVLQFKA  660
FQLSWKRDMH QLAISKYNAK SHKKCESNLY IKNGAIQKLP QSVRLKFYSP APGRESPPPT  720
AEFLNFMGKL LLGFQHKRCR DILRMPAMIL GEKEKVISRF ISSNGLIEDP CAVEKERAMI  780
NPWGSEEREI FLDKLAMYGK DFRKIASHLE QKTTADCIDF YYKNHKSDCF VKIKKKLANG  840
KERKCNFMLA PRKKWKREMG AASLDILGAV SVIAGNASKV TSTRQMSSKR ITPGGSRCLH  900
HSDNSSEGCF YNFDLHDKQT ISADGLSGGD GSLSTGLISS CLRSSADPEE RCRKYPKFDS  960
TLKISQLSHA THCDNSSDED DTCSEESFEE TSPVHWTDEE RSAFMQGFLL YGKNFAMISQ  1020
CIGTRSQDQC KVFFSKVRKC LGLELIQLQS GNASTSASVD NSNEGGGSEM EVPCALEGSS  1080
VMCNDDLCAK MDVNLPNLPF NVNRDGADHL GSVKLKSDLD RSEQENGSAC LGWKDGVEVV  1140
DTNASPVHMD CSDSVPKTVE SQCPAVEKTE SDQLLCTETN QGVLVSAVVS PQPPSSNATV  1200
LANLILKSFT ERLREYSDSV KETANGTRDP PLIPAEAASS SGFSLPECLH HVPIEMCVEG  1260
VHLPQENSSS HSETGSPNAF DVHVMERHNL DARFFSNAHL SFGEKHQFYG QNSLQDVHVS  1320
NTTEASRIPW SSFMQDPSLN KRSKSDVIVT TTLGTGEDFS LNRCSSLTSN STSAKQRRLS  1380
QKESRTVNTR RHSRSLSDTE RPYKNEDLRL FGTIVTSHEN ERNTHHLHES IRQDLQNVPI  1440
ASYGIWDGNR IRTGFTALQY PEAFAVQDVS STSEVQVGSS REIQPDGLSV YTRRKLNGST  1500
EIPVFGTQID GD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C2e-14740830493NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D2e-14740830493NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529104.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529104.10.0PREDICTED: uncharacterized protein LOC104806084 isoform X2
TrEMBLR0HEB90.0R0HEB9_9BRAS; Uncharacterized protein
STRINGXP_010529103.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.10.0MYB family protein