PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010529103.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 1559aa MW: 172821 Da PI: 6.8828 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.4 | 3.8e-09 | 829 | 870 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W eE e+++d +++G++ +++Ia+++ +t +c+++++k XP_010529103.1 829 PWGSEEREIFLDKLAMYGKD-FRKIASHLE-QKTTADCIDFYYK 870 8*****************99.*********.9**********98 PP | |||||||
2 | Myb_DNA-binding | 25.4 | 3.4e-08 | 1042 | 1084 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE + +++ ++G++ ++ I++++g +R+ qck ++ k+ XP_010529103.1 1042 HWTDEERSAFMQGFLLYGKN-FAMISQCIG-TRSQDQCKVFFSKV 1084 5*****************99.*********.********998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.16E-13 | 813 | 873 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-5 | 821 | 871 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 16.153 | 825 | 876 | IPR017884 | SANT domain |
SMART | SM00717 | 4.8E-8 | 826 | 874 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-7 | 829 | 870 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.80E-6 | 829 | 871 | No hit | No description |
PROSITE profile | PS51293 | 11.072 | 1038 | 1089 | IPR017884 | SANT domain |
SMART | SM00717 | 3.5E-6 | 1039 | 1087 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-10 | 1042 | 1089 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.3E-5 | 1042 | 1083 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-5 | 1042 | 1083 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-4 | 1043 | 1084 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1559 aa Download sequence Send to blast |
MPQDHASWDR KDLLRHRKHE RLAQSFDSSF RWRNSSSVSS SHHVPREFSR WDPGDVRRPH 60 GHGKQGGRHQ FASETDHGHV SSRSSTRIFE DDNYRPSASR GDWRYNKNTR DGRVSFNQKE 120 WKHHTWEMNN GSTRILGRLP DMNNDCLSAD ERPSNASDSR TAISKLSVLA HPTQQNIEIS 180 PVKTPTGNWD QNFSNQRLAS PSHPHSVSGS LYELSYLLDK HDNEVCSSGR QCHDVRGDNT 240 SLCPSNFHVD LQLTHGQLLS KDQKDDKVHG VNGIHIVEKL GKESCLGSIN WKHPLWTHSG 300 RFASRGFGFS HSSSSKSFGA VDTIEQKTEV LPKIVSVTES TSRDAASYFT SSCLPEETNS 360 RKKPRLGWGE GLAKYEKKKV DVNLCEDGNT MLANSTGEAY SLLCKSPTMV NASDFGSPAT 420 PSSVACSSSP GTRDKPSCMA AKAVSDASNL CRSPSPVFNY QLERIPFNLE DAGNISMENL 480 SCLLSELLRT DDSGPGDSCS IQWNVMNKVL AWKVDVLKVL ELTESEIDLL ENKRRALKFE 540 AGSLCPYQIG PVEQGAPCVA ERPEGAVHNA VPAKVSVDAT GEGVERSQDT VDIPSIKTAT 600 SSTDVDMSSF AIGSTTINDD TVQLSSGCCS IASEEDVSVI LVSNRKFAHE ASEVFNMLLP 660 RQYSWSNDTR CSTMCQDEVD PHIKQTIAVK RRIMRVKEKI LVLQFKAFQL SWKRDMHQLA 720 ISKYNAKSHK KCESNLYIKN GAIQKLPQSV RLKFYSPAPG RESPPPTAEF LNFMGKLLLG 780 FQHKRCRDIL RMPAMILGEK EKVISRFISS NGLIEDPCAV EKERAMINPW GSEEREIFLD 840 KLAMYGKDFR KIASHLEQKT TADCIDFYYK NHKSDCFVKI KKKLANGKER KCNFMLAPRK 900 KWKREMGAAS LDILGAVSVI AGNASKVTST RQMSSKRITP GGSRCLHHSD NSSEGCFYNF 960 DLHDKQTISA DGLSGGDGSL STGLISSCLR SSADPEERCR KYPKFDSTLK ISQLSHATHC 1020 DNSSDEDDTC SEESFEETSP VHWTDEERSA FMQGFLLYGK NFAMISQCIG TRSQDQCKVF 1080 FSKVRKCLGL ELIQLQSGNA STSASVDNSN EGGGSEMEVP CALEGSSVMC NDDLCAKMDV 1140 NLPNLPFNVN RDGADHLGSV KLKSDLDRSE QENGSACLGW KDGVEVVDTN ASPVHMDCSD 1200 SVPKTVESQC PAVEKTESDQ LLCTETNQGV LVSAVVSPQP PSSNATVLAN LILKSFTERL 1260 REYSDSVKET ANGTRDPPLI PAEAASSSGF SLPECLHHVP IEMCVEGVHL PQENSSSHSE 1320 TGSPNAFDVH VMERHNLDAR FFSNAHLSFG EKHQFYGQNS LQDVHVSNTT EASRIPWSSF 1380 MQDPSLNKRS KSDVIVTTTL GTGEDFSLNR CSSLTSNSTS AKQRRLSQKE SRTVNTRRHS 1440 RSLSDTERPY KNEDLRLFGT IVTSHENERN THHLHESIRQ DLQNVPIASY GIWDGNRIRT 1500 GFTALQYPEA FAVQDVSSTS EVQVGSSREI QPDGLSVYTR RKLNGSTEIP VFGTQIDGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 2e-14 | 787 | 877 | 4 | 93 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 2e-14 | 787 | 877 | 4 | 93 | NUCLEAR RECEPTOR COREPRESSOR 2 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010529103.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010529103.1 | 0.0 | PREDICTED: uncharacterized protein LOC104806084 isoform X1 | ||||
TrEMBL | R0HEB9 | 0.0 | R0HEB9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010529103.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5260 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 0.0 | MYB family protein |