PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528971.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 296aa    MW: 32719.1 Da    PI: 7.2652
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528971.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-05104123120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+k+F+r  n++ H+
  XP_010528971.1 104 FSCSVCSKTFNRFNNMQMHM 123
                     89*****************9 PP
2zf-C2H213.30.00025189211123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_010528971.1 189 FGCRKCGKAFAVRGDWRTHEKNC 211
                     56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.66E-597126No hitNo description
Gene3DG3DSA:3.30.160.603.3E-5104123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.201104131IPR007087Zinc finger, C2H2
SMARTSM003550.29104126IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
SMARTSM00355180152184IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.95E-6170209No hitNo description
Gene3DG3DSA:3.30.160.607.0E-6175209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.58189209IPR007087Zinc finger, C2H2
SMARTSM0035597189209IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGLNYQNGNE YNFSGDDESV VLRLGPPGQN HKPTTKKPSP TTNPNNISDD ANGVTVALHI  60
GPPSAAEKGS SGGSDVDGFT ATVLPRGQYW IPSLAQILVG PTQFSCSVCS KTFNRFNNMQ  120
MHMWGHGSQY RKGPESLRGT KSSSSILRLP CYCCAEGCKN NIEHPRSKPL KDFRTLQTHY  180
KRKHGAKPFG CRKCGKAFAV RGDWRTHEKN CGKLWFCVCG SDFKHKRSLK DHVKAFGDGH  240
APHTIGDRVV AIGGGEDDYD DDDGDGDEED DDCGDEDDDR GENYECFRRY GQFSRN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528971.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019057093.10.0PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-144ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLD7KQE11e-143D7KQE1_ARALL; Zinc finger family protein
STRINGXP_010528971.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-138C2H2-like zinc finger protein