PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528773.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 165aa    MW: 19096.8 Da    PI: 9.3439
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528773.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.31.2e-56161431129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdee++++yL++kv ++k+++  ++ e+d++++ePwdL++k+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke+++ 
  XP_010528773.1  16 LPPGFRFHPTDEEIITCYLTEKVMNSKFSA-AAVGEADLNRCEPWDLHEKAKMGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIFRG 109
                     79*************************999.78**************999999****************************************** PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     kg lvg++ktLvfykgrapkgekt+Wvmheyrle
  XP_010528773.1 110 KGYLVGMRKTLVFYKGRAPKGEKTNWVMHEYRLE 143
                     ********************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5911149IPR003441NAC domain
PROSITE profilePS5100554.92116165IPR003441NAC domain
PfamPF023655.8E-3017142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MEEIENNSKG GGLVDLPPGF RFHPTDEEII TCYLTEKVMN SKFSAAAVGE ADLNRCEPWD  60
LHEKAKMGEK EWYFFCQKDR KYPTGMRTNR ATESGYWKAT GKDKEIFRGK GYLVGMRKTL  120
VFYKGRAPKG EKTNWVMHEY RLEGNLPFPN LNRFSKVSKN HNVVC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-491414215142NO APICAL MERISTEM PROTEIN
1ut4_B1e-491414215142NO APICAL MERISTEM PROTEIN
1ut7_A1e-491414215142NO APICAL MERISTEM PROTEIN
1ut7_B1e-491414215142NO APICAL MERISTEM PROTEIN
3swm_A1e-491414218145NAC domain-containing protein 19
3swm_B1e-491414218145NAC domain-containing protein 19
3swm_C1e-491414218145NAC domain-containing protein 19
3swm_D1e-491414218145NAC domain-containing protein 19
3swp_A1e-491414218145NAC domain-containing protein 19
3swp_B1e-491414218145NAC domain-containing protein 19
3swp_C1e-491414218145NAC domain-containing protein 19
3swp_D1e-491414218145NAC domain-containing protein 19
4dul_A1e-491414215142NAC domain-containing protein 19
4dul_B1e-491414215142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528773.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528773.11e-122PREDICTED: NAC domain-containing protein 59-like
SwissprotQ9FK441e-87NAC87_ARATH; NAC domain-containing protein 87
TrEMBLB9SHJ61e-87B9SHJ6_RICCO; NAC domain-containing protein 21/22, putative
STRINGXP_010528773.11e-121(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-90Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]