PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010528754.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 891aa MW: 101119 Da PI: 5.6094 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 8.8e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_010528754.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 33 | 1.4e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l XP_010528754.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.90E-12 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 4.4E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 6.47E-21 | 33 | 107 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.91E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 2.7E-59 | 407 | 656 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 891 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEAADDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDLRHR KRKRKGIDYN TEIPFEKRPP PGFYDTAYED RPADQVNFPT 240 TIEELEGKRR ADVEAQLRKQ DIARNKIAQR QDAPAAILQA NKLNDPEAVR KRSKLMLPPP 300 QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKKEIQTPNP MLTPSMTPGG 420 ASLTPRIGMT PSRDGSSFAM TPRGTPFRDE LHINEDMDML ENSKLERQRR EEVRRSLRSG 480 LSDLPQPKNE YQIVAQPPPD DSEEPEEKIE EDMSDRIARE KAEEEARQQA LLRKRSKVLQ 540 RDLPRPPSAS LELIRNSLLS SDGDKSSFVP PTMIEQADEM IRKELLQLLE HDNVKYPLGE 600 KSEKKKGVKR RGNGSGSQVP AIEDFEEDDL KESDSMIKEE AQFLRVAMGH ENESLDDFVE 660 AHNTCLGDLM FFPTRNAYGL SSVAGHSEKV AALQIEMENI RKKIEEDEKK ADHFKAKCKT 720 YTKGYETRAE NLWTQIQSTL KQIDTAGTEL ECFKALQRQE QLAATFRKNN LRDEVKKQKE 780 LERTLQSRYG NLLSKLERAQ QLIVQFRAEA SKQEESQQNH ISEIATVGSE VNNVDADYVK 840 EAARVGENGE RESSDTVTEN QSQNVVEGEE GARETGGKVD DGESDAMETS G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDLRHRKRKRK |
2 | 199 | 204 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010528754.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010528754.1 | 0.0 | PREDICTED: cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A087HMC3 | 0.0 | A0A087HMC3_ARAAL; Uncharacterized protein | ||||
STRING | XP_010528754.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6453 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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