PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010528612.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ARF | ||||||||
Protein Properties | Length: 825aa MW: 91300.7 Da PI: 6.6594 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.1 | 3.4e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ ++++++ +l +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_010528612.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPAQ--ELLAKDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--RNE 217 99*****************************85444444..8************************************************..568 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_010528612.1 218 KNQLLLGIRRA 228 8889**99986 PP | |||||||
2 | Auxin_resp | 116.7 | 2e-38 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+v+Y+Pras+s+Fv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k XP_010528612.1 253 AAHAASTNSCFTVFYHPRASPSDFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336 79*******************************986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-48 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-40 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.73E-20 | 126 | 227 | No hit | No description |
Pfam | PF02362 | 3.4E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.041 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.1E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-33 | 253 | 336 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 4.45E-7 | 722 | 796 | No hit | No description |
PROSITE profile | PS51745 | 23.382 | 722 | 806 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 825 aa Download sequence Send to blast |
MKLSASGLGH QGHEGENKCL NSELWHACAG PLVSLPSSGS RVVYFPQGHS EQVAATTNKE 60 VDGHIPNYPS LPPQLISQLH NVTMHADVET DEVYAQMTLQ PLTPEEQKET FIPIELGIPS 120 KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELLAK DLHDVEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIRNEKNQ LLLGIRRAIR PQTIIPSSVL 240 SSDSMHIGLL AAAAHAASTN SCFTVFYHPR ASPSDFVIPL SKYIKAVFHT RISVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSLFP LRLKRPWHAG PSSLHDSRGD LTSGLSWLRG GAGEQGLLPL NFSSVGMVPW 420 MQQRLDLGLL GATDHNQQYQ AMLAAGLQNM SGGDPLRQQP FVQLQEEPHH QYLQQSGGHN 480 SDLLLQQQQQ QLPRHLLEAQ TRQMLTENIP HQTIRQEVSN QPAGQPHQPN HAYLNALKMQ 540 NGHLQQWQPS DLPSASFMKA DFTDSNHKFA TTVTPIQQNS AAPASGSGDG SNLLSFSITG 600 QPLLAEQLPS QAWSPKHAHS AANAFSEPLP LQQGYARKGT ALELGNSNPN PHSPSIFGVD 660 SDSGLFLPTT VPRYAPLPAA EADASSMSLT DSGFQNSLYS CMQDAPELLH GAGDINASNQ 720 IKNFVKVYKS GSVGRSLDIS RFSSYNELRE ELGKMFGIEG LLEDPLRSGW QLVFVDKEND 780 ILLLGDDPWE SFVNNVWYIK ILSPEDVQKM GQQGDGSFLQ NPNHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-156 | 20 | 357 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010528612.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010528612.1 | 0.0 | PREDICTED: auxin response factor 8-like | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | R0GF16 | 0.0 | R0GF16_9BRAS; Auxin response factor | ||||
STRING | XP_010528612.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1344 | 28 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |