PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010528592.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | GRF | ||||||||
Protein Properties | Length: 313aa MW: 34772.5 Da PI: 8.2387 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.5 | 1.3e-24 | 67 | 111 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ XP_010528592.1 67 DPEPGRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 111 79****************************************997 PP | |||||||
2 | QLQ | 58.7 | 1.7e-20 | 5 | 41 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk XP_010528592.1 5 SLFTVSQWQELEHQALIFKYIIAGLPVPPDLVLPIQK 41 68*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.0E-11 | 5 | 41 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.845 | 6 | 41 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.3E-15 | 7 | 40 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.831 | 67 | 111 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.2E-21 | 68 | 110 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MRSSSLFTVS QWQELEHQAL IFKYIIAGLP VPPDLVLPIQ KSFENISHRF FTHPSFSSCS 60 LYGKKIDPEP GRCRRTDGKK WRCSKEAHPD SKYCERHMHR GRNRSRKPVE SSLQPTNTTT 120 SMHSSSSSST ATSLFTVVPG GGHSGNYQNI PLHRFGNIQP ATASVNCDQS TYNVDSIPFG 180 IPSKDYGYMQ MQGLKPESVE HSFFSAASGS NKNVQTSLLE NGNTWPVMQG SLQNSYDQSS 240 SFFNIDFASG EATKHDGQSL RPFLDEWPKA RASWSGLEDD RSNQYTTTTQ LSISIPMVSS 300 GFSSANSHSP HDT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010528592.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ382488 | 4e-42 | FQ382488.1 Vitis vinifera clone SS0ABG55YD19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010528592.1 | 0.0 | PREDICTED: growth-regulating factor 3-like isoform X2 | ||||
Refseq | XP_010528594.1 | 0.0 | PREDICTED: growth-regulating factor 3-like isoform X2 | ||||
TrEMBL | A0A067EAQ2 | 1e-135 | A0A067EAQ2_CITSI; Uncharacterized protein | ||||
STRING | XP_010528591.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-42 | growth-regulating factor 5 |