PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010528537.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 228aa MW: 26006.3 Da PI: 8.7167 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.6e-14 | 27 | 71 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+ +eE +l ++++k+lG++ W++Ia +++ gRt++++k++w+++l XP_010528537.1 27 GKLVPEEVDLVIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNSHL 71 66669****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.67 | 1 | 20 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 9.19E-19 | 6 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.2E-5 | 6 | 19 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 20 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.83 | 21 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-14 | 25 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-13 | 26 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.65E-10 | 31 | 71 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MASGLNRCRK SCRLRWLNYL KPSIKRGKLV PEEVDLVIRL HKLLGNRWSL IAGRLPGRTA 60 NDVKNYWNSH LRKKQNPSSN CKIKPTCRKQ INVRSLTEPV QKIDVIKPRP RSFYDNSQHR 120 FLNAPPQITF TGGGKDEDFN ENNNSDDNYK NDDIPRGNKT CDRDYEFGTM KSIVNDEGRE 180 IMWWESLLEE SEGAAAAEED ENITGAAESS PVNLAAATFD VGLWNLLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-16 | 7 | 74 | 40 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010528537.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010528537.2 | 1e-169 | PREDICTED: transcription factor MYB113-like isoform X2 | ||||
Swissprot | Q9FNV9 | 1e-53 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | E5D8F5 | 5e-57 | E5D8F5_BRAOB; MYB2 | ||||
STRING | XP_010528535.1 | 1e-166 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-51 | myb domain protein 113 |
Publications ? help Back to Top | |||
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