PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528535.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 265aa    MW: 30232 Da    PI: 9.2021
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528535.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.2e-151057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+ Ed ll +++ ++G g W+ ++++ g++R++k+c++rw++yl
   XP_010528535.1 10 KGTWTAGEDSLLRKCIDKYGEGKWHQVPSRAGLNRCRKSCRLRWLNYL 57
                     799*******************************************97 PP
2Myb_DNA-binding45.32.1e-1464108248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+  +eE +l ++++k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_010528535.1  64 GKLVPEEVDLVIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNSHL 108
                      66669****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.981557IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-21559IPR009057Homeodomain-like
SuperFamilySSF466892.21E-277104IPR009057Homeodomain-like
SMARTSM007171.5E-13959IPR001005SANT/Myb domain
PfamPF002493.0E-141057IPR001005SANT/Myb domain
CDDcd001675.67E-91257No hitNo description
PROSITE profilePS5129424.8358112IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2260111IPR009057Homeodomain-like
SMARTSM007176.1E-1462110IPR001005SANT/Myb domain
PfamPF002494.7E-1363108IPR001005SANT/Myb domain
CDDcd001675.26E-1068108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEGRSQGLRK GTWTAGEDSL LRKCIDKYGE GKWHQVPSRA GLNRCRKSCR LRWLNYLKPS  60
IKRGKLVPEE VDLVIRLHKL LGNRWSLIAG RLPGRTANDV KNYWNSHLRK KQNPSSNCKI  120
KPTCRKQINV RSLTEPVQKI DVIKPRPRSF YDNSQHRFLN APPQITFTGG GKDEDFNENN  180
NSDDNYKNDD IPRGNKTCDR DYEFGTMKSI VNDEGREIMW WESLLEESEG AAAAEEDENI  240
TGAAESSPVN LAAATFDVGL WNLLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2181112104MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-2181112104C-Myb DNA-Binding Domain
1msf_C1e-2181112104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528535.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528535.10.0PREDICTED: transcription factor MYB114-like isoform X1
SwissprotQ9FNV91e-75MY113_ARATH; Transcription factor MYB113
TrEMBLE5D8F53e-82E5D8F5_BRAOB; MYB2
STRINGXP_010528535.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-73myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]