PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010528478.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 332aa MW: 36157.6 Da PI: 8.3725

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010528478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95	7.9e-30	58	161	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ +++q++++ +++k++G++ +l+l++a p++ r+ +++sl+yeA+ r+ +P+yG+vg++++++++l+q+ XP_010528478.1 58 SCNGCRVLRKGCNENCSIRPCLqwiksAEAQANATVFLAKFYGRAGLLNLINAGPDHLRPSIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQA 152 6*******************9999777889*********************************************************** PP DUF260 91 kaelallke 99 ++e+++ ++ XP_010528478.1 153 AVEAVMKGS 161 9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	2.6E-87	55	331	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.832	57	163	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-24	58	158	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MIPPTKTKQL FFFLINTSLL PLRPYCTKNH LLPLISVFFF RGKKFFFLCI RRVKMRMSCN 60 GCRVLRKGCN ENCSIRPCLQ WIKSAEAQAN ATVFLAKFYG RAGLLNLINA GPDHLRPSIF 120 RSLLYEACGR IVNPIYGSVG LLWSGNWHLC QAAVEAVMKG SPITALASEA AETGEAPPLK 180 VYDIRHVPRD DNAGGGGGDG GRVVKSRCRS KRAAGTTKPR MPDVAEKMLL PAADAAESGH 240 ACGGSTSHDS SLSHQSEFLA AEAGGDSKDE ESMVSEEPTA ISRAPVEEIG LELTLGLEPM 300 SRDGHAKKRK VEVRGTCEDD DSCRIELGLD YV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	211	RCRSKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010528478.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010528478.1	0.0	PREDICTED: LOB domain-containing protein 40
Swissprot	Q9M886	1e-106	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1R3KCF7	1e-116	A0A1R3KCF7_9ROSI; Uncharacterized protein
STRING	XP_010528478.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7721	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	4e-92	LOB domain-containing protein 41