PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010528459.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | TCP | ||||||||
Protein Properties | Length: 415aa MW: 46988.6 Da PI: 5.5979 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.6 | 5.3e-39 | 112 | 284 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................ss 67 + kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +ai + t+ + XP_010528459.1 112 PEKKDRHSKIHTAQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIRKVTQAkklnngdfssaniedewsgnnigdeeegeE- 205 579*************************************************************999999777666665555543332222210. PP TCP 68 ssaseceaesssssasnsssg..............................kaaksaakskksqksaasalnlak..esrakarararertrekm 130 + ++++++ + +++++++ l+ sr kar+ +er r+k XP_010528459.1 206 --------------------EdeeeeeedddedksfvsgsssegceemvyeAKKRDQIDGFVQREKKNNELSHISskGSRGKAREGGKERARDKT 280 ....................011111223333445667777789999999755555555555554444333332225888999999999999888 PP TCP 131 rikn 134 +n XP_010528459.1 281 GSRN 284 7665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.2E-38 | 113 | 280 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.233 | 114 | 172 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MFSSNDDTNN NNGVYPLALY LSSLCSHDNN MSSASYNHHQ HHQLQQHHNQ LNLHPNDHLM 60 AAPQNHQFSS PSMPESLINY MPFLSNNVMM DQNLVNGGCS DRVEALRGIK KPEKKDRHSK 120 IHTAQGLRDR RVRLSIGIAR QFFDLQDMLG FDKASKTLDW LLKKSRKAIR KVTQAKKLNN 180 GDFSSANIED EWSGNNIGDE EEGEEEDEEE EEEDDDEDKS FVSGSSSEGC EEMVYEAKKR 240 DQIDGFVQRE KKNNELSHIS SKGSRGKARE GGKERARDKT GSRNTDLPQI YQISQSQVLL 300 DSMRSTTLNV GKAKMPSSVH CQDMTSFYEQ PIEEAGRFQG LYLANQESNS FITRKTKPSA 360 LSYGQQNGGV MSENQSSTSD NITILPQNWE NYDQNPFLDA PFGVFFNMNA STRLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-14 | 119 | 172 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-14 | 119 | 172 | 1 | 54 | Putative transcription factor PCF6 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010528459.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010528459.1 | 0.0 | PREDICTED: transcription factor TCP1 isoform X2 | ||||
STRING | XP_010528458.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-71 | TCP family protein |