PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528458.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 423aa    MW: 47855.5 Da    PI: 5.4594
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528458.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.55.5e-391122842134
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................ss 67 
                     + kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +ai + t+                              + 
  XP_010528458.1 112 PEKKDRHSKIHTAQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIRKVTQAkklnngdfssaniedewsgnnigdeeegeE- 205
                     579*************************************************************999999777666665555543332222210. PP

             TCP  68 ssaseceaesssssasnsssg..............................kaaksaakskksqksaasalnlak..esrakarararertrekm 130
                                         +                              ++++++  +  +++++++ l+      sr kar+  +er r+k 
  XP_010528458.1 206 --------------------EdeeeeeedddedksfvsgsssegceemvyeAKKRDQIDGFVQREKKNNELSHISskGSRGKAREGGKERARDKT 280
                     ....................011111223333445667777789999999755555555555554444333332225888999999999999888 PP

             TCP 131 rikn 134
                       +n
  XP_010528458.1 281 GSRN 284
                     7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.4E-38113280IPR005333Transcription factor, TCP
PROSITE profilePS5136934.233114172IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MFSSNDDTNN NNGVYPLALY LSSLCSHDNN MSSASYNHHQ HHQLQQHHNQ LNLHPNDHLM  60
AAPQNHQFSS PSMPESLINY MPFLSNNVMM DQNLVNGGCS DRVEALRGIK KPEKKDRHSK  120
IHTAQGLRDR RVRLSIGIAR QFFDLQDMLG FDKASKTLDW LLKKSRKAIR KVTQAKKLNN  180
GDFSSANIED EWSGNNIGDE EEGEEEDEEE EEEDDDEDKS FVSGSSSEGC EEMVYEAKKR  240
DQIDGFVQRE KKNNELSHIS SKGSRGKARE GGKERARDKT GSRNTDLPQI YQISQSQVLL  300
DSMRSTTLNV GKAKMPSSVH CQDMTSFYEQ PIEEAGRFQG LYLANQESNS FITRKTKPSA  360
LSYGQQNGGV MSENQSSTSD NITILPQNWE NYDQNPFLDA PFGVFFNMNA STSKEFGSNS  420
WLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-14119172154Putative transcription factor PCF6
5zkt_B1e-14119172154Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528458.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528458.10.0PREDICTED: transcription factor TCP1 isoform X1
STRINGXP_010528458.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.15e-72TCP family protein