PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528425.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 25980.6 Da    PI: 10.0612
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528425.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.81.4e-231056250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +ienk++rqvtfsk   g+ KKA+E+SvLCdaeva+++fss+gkl+eys
  XP_010528425.1 10 QIENKIRRQVTFSK--XGLVKKAQEISVLCDAEVALVVFSSKGKLFEYS 56
                    69***********7..8*******************************8 PP
2K-box83.64.2e-288617214100
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + ++++e +kL + i+  qr++Rhl+Ge+++ Ls++eLq+Le qL+ slkk Rs+Kn+l+le+i +lqkkekel+e  ++L+kk++e
  XP_010528425.1  86 QGNSSTECSKLLRMIDVVQRSLRHLKGEEMDGLSIRELQSLEMQLDISLKKTRSRKNQLMLESITQLQKKEKELKELRNQLTKKIDE 172
                     66899*******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.119159IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-28158IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-26275IPR002100Transcription factor, MADS-box
CDDcd002658.89E-32276No hitNo description
PfamPF003196.9E-191155IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-132136IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-133657IPR002100Transcription factor, MADS-box
PfamPF014861.9E-2385170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.61386176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRGRVQLRQ IENKIRRQVT FSKXGLVKKA QEISVLCDAE VALVVFSSKG KLFEYSAGSS  60
MDKIIDRYER HSCSSQEIPA PISDSQGNSS TECSKLLRMI DVVQRSLRHL KGEEMDGLSI  120
RELQSLEMQL DISLKKTRSR KNQLMLESIT QLQKKEKELK ELRNQLTKKI DESKKVERVD  180
QSGELEPSSP PPPLSLGGAF QRREADAGTL IRPPTSTTLP HWMPRRSED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-18172173MEF2 CHIMERA
6byy_B5e-18172173MEF2 CHIMERA
6byy_C5e-18172173MEF2 CHIMERA
6byy_D5e-18172173MEF2 CHIMERA
6bz1_A5e-18172173MEF2 CHIMERA
6bz1_B5e-18172173MEF2 CHIMERA
6bz1_C5e-18172173MEF2 CHIMERA
6bz1_D5e-18172173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528425.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528425.11e-165PREDICTED: LOW QUALITY PROTEIN: truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S77e-72AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLV4KMQ11e-102V4KMQ1_EUTSA; Uncharacterized protein
STRINGXP_010528425.11e-164(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM130331525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.11e-86AGAMOUS-like 79
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]