PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528356.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 332aa    MW: 37114.1 Da    PI: 6.2921
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528356.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.57.1e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l+ +v+q+G g W++ +++ g++R++k+c++rw +yl
   XP_010528356.1 14 KGPWTPEEDEKLLAYVEQHGHGGWRSLPSKAGLHRCGKSCRLRWINYL 61
                     79********************************************97 PP

2Myb_DNA-binding55.71.2e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
   XP_010528356.1  67 RGKFSSQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNHWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-27564IPR009057Homeodomain-like
PROSITE profilePS5129419.049961IPR017930Myb domain
SuperFamilySSF466892.68E-3111108IPR009057Homeodomain-like
SMARTSM007173.4E-151363IPR001005SANT/Myb domain
PfamPF002491.9E-161461IPR001005SANT/Myb domain
CDDcd001672.22E-111661No hitNo description
PROSITE profilePS5129426.9462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2665116IPR009057Homeodomain-like
SMARTSM007178.7E-1766114IPR001005SANT/Myb domain
PfamPF002491.4E-1667112IPR001005SANT/Myb domain
CDDcd001671.33E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGRSPCCDKD GLKKGPWTPE EDEKLLAYVE QHGHGGWRSL PSKAGLHRCG KSCRLRWINY  60
LRPDIKRGKF SSQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNHWNT HLKKRLAKMG  120
IDPVTHKPKN ETLLTMSTGQ TKNVVNLSHM AQWESARLEA EARLVREAKL RSYSVRCRQT  180
TWSSASNIEN GMEFVNAASD DDATRTASCP TLHRQNVTES IAATSDPSDS SKGDSGDNDK  240
DNSRDEDDVS EGYKGNLDIS LEFGSDRVVD NVAGEGFADL LLNGSVDRSL SGEGREYSGE  300
SCGSHYLIED NRDYWNNILD MVNSLPSDSQ MF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528356.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528356.10.0PREDICTED: transcription factor MYB32-like
SwissprotQ9LXF11e-120MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A0B0NJY11e-128A0A0B0NJY1_GOSAR; Transcription factor MYB39-like protein
STRINGXP_010528356.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-118myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]