PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010528347.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 472aa MW: 50874.1 Da PI: 6.3607 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.3 | 9.3e-40 | 144 | 204 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_010528347.1 144 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 204 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-31 | 137 | 201 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.6E-32 | 146 | 202 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.975 | 148 | 202 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 150 | 186 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 472 aa Download sequence Send to blast |
MSDPAIKLFG KTIPLPEIAA SPSGAVSSSG GGGLIDRRDQ DPASVPDSSV GEDNTTDDGC 60 DDGGGGGGNG GCGGEERESE KEENINGRGE EHGGESSIQE SGATSGKSGL TDRMETPKAQ 120 AGKAEEESQN ETGASSQETK LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR 180 YWTAGGTMRN VPVGAGRRKN KNSASHFNRH VSISAEAMQK PRTELHHPNG THLLTFGSDQ 240 LLCESMASGL NLADKAMLKT RNGFHEPAEG LKIQIPYENN VNSSSNPPSE EAGASGSMPK 300 VPCFPAPPPW PYSWNGVPWT VLPFYPPPTY WSCPGAPPVT WNGFPWMAQP NSPSGSGPNS 360 PTLGKHSRDE NTAEPGTSSK ETEPSTKEKS NPERYLWVPK TLRIDDPEEA AKSSIWETLG 420 IKNDEKGETF RAFRSKKEKG ARAKENPSSP PVPVLQANPA AMSRSMNFHE RS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010528347.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010528347.1 | 0.0 | PREDICTED: cyclic dof factor 2 isoform X2 | ||||
Swissprot | Q93ZL5 | 0.0 | CDF2_ARATH; Cyclic dof factor 2 | ||||
TrEMBL | A0A178UGH8 | 0.0 | A0A178UGH8_ARATH; CDF2 | ||||
STRING | XP_010528346.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G39660.2 | 1e-174 | cycling DOF factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|