PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528346.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 475aa    MW: 51262.5 Da    PI: 6.2041
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.39.3e-40147207262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s 
  XP_010528346.1 147 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 207
                     7899******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-31140204IPR003851Zinc finger, Dof-type
PfamPF027013.7E-32149205IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.975151205IPR003851Zinc finger, Dof-type
PROSITE patternPS013610153189IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MSDPAIKLFG KTIPLPEIAA SPSGAVSSSG GGGLIDRRDQ DPASVPDSSV GEDNTTDDGC  60
DDGGGGGGNG GCGGEERESE KEMQEENING RGEEHGGESS IQESGATSGK SGLTDRMETP  120
KAQAGKAEEE SQNETGASSQ ETKLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN  180
CQRYWTAGGT MRNVPVGAGR RKNKNSASHF NRHVSISAEA MQKPRTELHH PNGTHLLTFG  240
SDQLLCESMA SGLNLADKAM LKTRNGFHEP AEGLKIQIPY ENNVNSSSNP PSEEAGASGS  300
MPKVPCFPAP PPWPYSWNGV PWTVLPFYPP PTYWSCPGAP PVTWNGFPWM AQPNSPSGSG  360
PNSPTLGKHS RDENTAEPGT SSKETEPSTK EKSNPERYLW VPKTLRIDDP EEAAKSSIWE  420
TLGIKNDEKG ETFRAFRSKK EKGARAKENP SSPPVPVLQA NPAAMSRSMN FHERS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528346.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528346.10.0PREDICTED: cyclic dof factor 2 isoform X1
SwissprotQ93ZL50.0CDF2_ARATH; Cyclic dof factor 2
TrEMBLA0A178UGH80.0A0A178UGH8_ARATH; CDF2
STRINGXP_010528346.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137951825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-174cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]