PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528297.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 344aa    MW: 38402.9 Da    PI: 5.4
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528297.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding568.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +++ +v  +G g+W++I+++ g++R++k+c++rw +yl
   XP_010528297.1 14 KGLWTPEEDAKILAYVSIHGVGNWTLIPKKAGLNRCGKSCRLRWTNYL 61
                     678*******************************************97 PP
2Myb_DNA-binding46.96.5e-1570110446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++ E+el+++++k  G++ W++Ia++++ gRt++++k++w++
   XP_010528297.1  70 FSPREEELIIQYHKAIGSR-WSLIAKELP-GRTDNDVKNYWNT 110
                      899****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-25564IPR009057Homeodomain-like
PROSITE profilePS5129427.576965IPR017930Myb domain
SuperFamilySSF466891.25E-3011108IPR009057Homeodomain-like
SMARTSM007176.5E-161363IPR001005SANT/Myb domain
PfamPF002492.8E-161461IPR001005SANT/Myb domain
CDDcd001674.84E-131761No hitNo description
Gene3DG3DSA:1.10.10.609.7E-2465117IPR009057Homeodomain-like
SMARTSM007174.9E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129416.71866116IPR017930Myb domain
CDDcd001671.62E-1170112No hitNo description
PfamPF002491.8E-1370110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGRPPCCDKS NVKKGLWTPE EDAKILAYVS IHGVGNWTLI PKKAGLNRCG KSCRLRWTNY  60
LRPDLKHDGF SPREEELIIQ YHKAIGSRWS LIAKELPGRT DNDVKNYWNT KLKKKLIKMG  120
IDPVTHKPVS QVLSDYGHIS SHGNPQNPSE TFVRSFNTTS VLNPEPSNSL LTSISAVEMI  180
MNSNQESYNS PILTNPSPEF LNPCFLSNQS PYLFNEVTSS CSSSSSSASI TQPNPLSQAQ  240
APELSFCWSD YLLADTGLPL NTQRPEQLDA QNALSSASSN LSLVQNETQN RNINGEDEYS  300
SQKIAAEASG MYDLHSMGSF VDEILDRDQE MQSQFPQLLN DFDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528297.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545807e-32AC254580.1 Capsella rubella clone JGIBSIA-5G22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528297.10.0PREDICTED: transcription factor MYB35
SwissprotQ9LSI71e-121MYB35_ARATH; Transcription factor MYB35
TrEMBLV4KRL91e-144V4KRL9_EUTSA; Uncharacterized protein
STRINGXP_010528297.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.11e-116MYB family protein
Publications ? help Back to Top
  1. Tsugama D, et al.
    A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis.
    Sci Rep, 2017. 7: p. 41497
    [PMID:28176806]
  2. Lou Y, et al.
    Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana.
    New Phytol., 2018. 217(1): p. 378-391
    [PMID:28940573]
  3. Li DD,Xue JS,Zhu J,Yang ZN
    Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 1559
    [PMID:28955355]