PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528251.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 224aa    MW: 25702.9 Da    PI: 7.5015
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528251.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.1e-191764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT eEd++l+d+v+ +G+g+W++Ia++ g++R++k+c++rw +yl
   XP_010528251.1 17 KGLWTVEEDKILIDYVRTHGKGHWNRIAKKTGLKRCGKSCRLRWMNYL 64
                     678*******************************************97 PP
2Myb_DNA-binding61.32e-1970115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++l+++++k+lG++ W++Ia++++ gRt++q+k++w+++l
   XP_010528251.1  70 RGNFTEQEEDLIIRLHKLLGNR-WSLIAKRVP-GRTDNQVKNYWNTHL 115
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.6531264IPR017930Myb domain
SuperFamilySSF466891.59E-3115111IPR009057Homeodomain-like
SMARTSM007172.0E-161666IPR001005SANT/Myb domain
PfamPF002491.3E-171764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-251871IPR009057Homeodomain-like
CDDcd001671.06E-132064No hitNo description
PROSITE profilePS5129428.11865119IPR017930Myb domain
SMARTSM007178.1E-1969117IPR001005SANT/Myb domain
PfamPF002492.1E-1870115IPR001005SANT/Myb domain
CDDcd001671.99E-1472115No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2772119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MKRTREEGKE EEEEYKKGLW TVEEDKILID YVRTHGKGHW NRIAKKTGLK RCGKSCRLRW  60
MNYLSPNVNR GNFTEQEEDL IIRLHKLLGN RWSLIAKRVP GRTDNQVKNY WNTHLSKKLG  120
IRSDQSTAKN GESSSPPPMI FTTAATTTSS SCPQDMINTN KTDTATNFEP TGQVQITAND  180
DVTLPAMFDD ITNCYNANAF WVHQDDYFEL SSLTMMDFAD GHCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29171197108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumulation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15668208, ECO:0000269|PubMed:15728674}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528251.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528251.11e-170PREDICTED: transcription factor WER
SwissprotQ962764e-93MYB23_ARATH; Transcription factor MYB23
TrEMBLA0A087GV775e-95A0A087GV77_ARAAL; Uncharacterized protein
STRINGXP_010528251.11e-170(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.11e-87myb domain protein 23
Publications ? help Back to Top
  1. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  2. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]
  3. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  4. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]