PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010528230.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 147aa MW: 16033 Da PI: 7.7082

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010528230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.4	1.4e-44	13	111	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC++dCv+apyfp e+p kfanvh++FGasnv+k+l+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l+ el+ XP_010528230.1 13 PCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILQEVEPHQREDAVNSLAYEAEARLKDPVYGCVGAISILQRQVIRLQRELE 107 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_010528230.1 108 ETNA 111 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.626	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-44	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MASSSCTSYA NSPCAACKFL RRKCTSDCVF APYFPPEEPT KFANVHRIFG ASNVSKILQE 60 VEPHQREDAV NSLAYEAEAR LKDPVYGCVG AISILQRQVI RLQRELEETN ADLMRYASCF 120 GAETTSFGGR KSGGRGGGRD GEGYGGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-60	3	117	1	115	LOB family transfactor Ramosa2.1
5ly0_B	3e-60	3	117	1	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010528230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010528230.1	1e-106	PREDICTED: LOB domain-containing protein 25
Swissprot	Q8L8Q3	4e-81	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	R0FRU7	2e-80	R0FRU7_9BRAS; Uncharacterized protein
STRING	XP_010528230.1	1e-105	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-82	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]