PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010528045.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | RAV | ||||||||
Protein Properties | Length: 364aa MW: 40545 Da PI: 9.5153 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.4 | 8.7e-14 | 64 | 112 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g XP_010528045.1 64 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 112 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 103.3 | 1.3e-32 | 201 | 302 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+ tpsdv+k++rlv+pk++ae+h g+++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F++++ +++ XP_010528045.1 201 FEKAVTPSDVGKLNRLVIPKHHAEKHfplpsGNVSVKGVLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDVVSFSRSNGQDQ 295 89*****************************99999****************************************************9877888 PP ..EEEEE CS B3 91 elvvkvf 97 +l++++ XP_010528045.1 296 QLYIGWK 302 8998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.77E-17 | 64 | 120 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.32E-26 | 64 | 122 | No hit | No description |
Pfam | PF00847 | 2.8E-9 | 64 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-20 | 65 | 121 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-29 | 65 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.455 | 65 | 120 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-41 | 194 | 308 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-32 | 199 | 306 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.64E-29 | 200 | 292 | No hit | No description |
Pfam | PF02362 | 1.1E-29 | 201 | 303 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-25 | 201 | 305 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.381 | 201 | 305 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MDVSSVDEST TSAETVNTPP MTTPETRPPA RKSPEKLYRM GSGSSVVLDS ENGVEFESRK 60 LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA RAYDVAAQRF RGRDAVTNFK 120 NARLDDDEVA FLNAHSKSEI VDMLRKHTYN EELEQSKRRS RSRYGNSNGN DDRNGNGKSP 180 GTGDGNDGVS GTEFRSAEAL FEKAVTPSDV GKLNRLVIPK HHAEKHFPLP SGNVSVKGVL 240 LNFEDVTGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLK AGDVVSFSRS NGQDQQLYIG 300 WKARSDPDSE PGRVVKLFGV NISSTVDCSN DVVARSGGQK RAREVEETML SLGCCKKQRV 360 FVAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-72 | 197 | 308 | 10 | 121 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00139 | DAP | Transfer from AT1G13260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010528045.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010528045.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9ZWM9 | 0.0 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | D7KQD7 | 0.0 | D7KQD7_ARALL; Uncharacterized protein | ||||
STRING | XP_010528045.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 0.0 | related to ABI3/VP1 1 |
Publications ? help Back to Top | |||
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