PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010528041.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 313aa MW: 35027.4 Da PI: 7.4549 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+d+++++G+g +W +++ g++R++k+c++rw++yl XP_010528041.1 14 RGPWSPEEDAKLKDYIEKHGTGgNWIVFPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.2 | 9e-14 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+eEd ++ +++ G++ W+ Ia+++ gRt++++k++w++ XP_010528041.1 68 RGDFTEEEDRIICSLFASIGSR-WSVIAAHLH-GRTDNDIKNYWNT 111 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.052 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.56E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.83E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.145 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-12 | 68 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 70 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.01E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MGRAPCCDKH NVKRGPWSPE EDAKLKDYIE KHGTGGNWIV FPQKAGLKRC GKSCRLRWLN 60 YLRPNVRRGD FTEEEDRIIC SLFASIGSRW SVIAAHLHGR TDNDIKNYWN TKLKKKLIAS 120 MAPPLLNLPS SSSSSSRTTS STWPPSPSAA AASMSSQYNN KISSTLIPQY PSLSSLLSSN 180 TASYLPPHEG MMMMVTTTMG HHHHHHLQQE DMGNLVNSPY YSNSIIINDV MMMSHQEESM 240 NQSTNKGVMD SDGSGTSTTT GAEKMDHNNS NDHSDDGKMS LNTLVEDHGL EDIKQLISKN 300 YLFLFDDMKM DDR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010528041.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010528041.1 | 0.0 | PREDICTED: transcription factor RAX2-like | ||||
Swissprot | Q9SJL7 | 1e-94 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | A0A3P6D704 | 4e-96 | A0A3P6D704_BRACM; Uncharacterized protein (Fragment) | ||||
TrEMBL | M4DL37 | 2e-96 | M4DL37_BRARP; Uncharacterized protein | ||||
STRING | XP_010528041.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 2e-77 | MYB family protein |
Publications ? help Back to Top | |||
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