PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528041.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 313aa    MW: 35027.4 Da    PI: 7.4549
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.4e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+d+++++G+g +W   +++ g++R++k+c++rw++yl
   XP_010528041.1 14 RGPWSPEEDAKLKDYIEKHGTGgNWIVFPQKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP

2Myb_DNA-binding43.29e-1468111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+eEd ++  +++  G++ W+ Ia+++  gRt++++k++w++
   XP_010528041.1  68 RGDFTEEEDRIICSLFASIGSR-WSVIAAHLH-GRTDNDIKNYWNT 111
                      899*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.052962IPR017930Myb domain
SuperFamilySSF466891.56E-2711109IPR009057Homeodomain-like
SMARTSM007177.9E-111364IPR001005SANT/Myb domain
PfamPF002499.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-231569IPR009057Homeodomain-like
CDDcd001671.83E-81662No hitNo description
PROSITE profilePS5129422.14563117IPR017930Myb domain
SMARTSM007172.0E-1267115IPR001005SANT/Myb domain
PfamPF002491.3E-1268111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2470118IPR009057Homeodomain-like
CDDcd001671.01E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRAPCCDKH NVKRGPWSPE EDAKLKDYIE KHGTGGNWIV FPQKAGLKRC GKSCRLRWLN  60
YLRPNVRRGD FTEEEDRIIC SLFASIGSRW SVIAAHLHGR TDNDIKNYWN TKLKKKLIAS  120
MAPPLLNLPS SSSSSSRTTS STWPPSPSAA AASMSSQYNN KISSTLIPQY PSLSSLLSSN  180
TASYLPPHEG MMMMVTTTMG HHHHHHLQQE DMGNLVNSPY YSNSIIINDV MMMSHQEESM  240
NQSTNKGVMD SDGSGTSTTT GAEKMDHNNS NDHSDDGKMS LNTLVEDHGL EDIKQLISKN  300
YLFLFDDMKM DDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528041.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528041.10.0PREDICTED: transcription factor RAX2-like
SwissprotQ9SJL71e-94RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A3P6D7044e-96A0A3P6D704_BRACM; Uncharacterized protein (Fragment)
TrEMBLM4DL372e-96M4DL37_BRARP; Uncharacterized protein
STRINGXP_010528041.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.12e-77MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]