PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010527914.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

M-type_MADS

Protein Properties

Length: 380aa MW: 42789.5 Da PI: 8.0349

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527914.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.8	2.1e-21	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq tf+kR++gi+KKA+ELS+LCd+ va+++fs++gk XP_010527914.1 10 KLENTNGRQATFAKRKHGIMKKANELSILCDIHVALLMFSPSGK 53 6799**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.5E-30	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.207	1	53	IPR002100	Transcription factor, MADS-box
CDD	cd00120	2.79E-25	2	54	No hit	No description
SuperFamily	SSF55455	1.44E-25	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.9E-20	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MGRVKLKIKK LENTNGRQAT FAKRKHGIMK KANELSILCD IHVALLMFSP SGKPSLCCGR 60 HSTIEEVIAK FAQVTPQERT KRKLESLEAL KKTFKKLDHD VNIREFIASG NPTVEDLSHQ 120 ARALQARLSE THRRISYWSE PEKINSIEHL GQLEISIRQS LDQLRAHKVS IPLLHVIISH 180 RVPEXRRFTL LFCCQQNLLQ MENSGLVKDW SNCLIQDGIQ IPLDQQLQSL SWIANNSSSN 240 IVTEELNLIP QRDIECSASS SFGSYSGYFG TGKSPEISIS GQETSFIDEL TGTAQLRPLA 300 NTQQFAYIPY NPNLPNDVKH QPLPPGLNLP MNQQTTDYHM NDLFESPGSS QARFGSSSSS 360 MPCSVAMFDD FFFSQLMQPN

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MGRVKLKIKK LENTNGRQAT FAKRKHGIMK KANELSILCD IHVALLMFSP SGKPSLCCGR  60
HSTIEEVIAK FAQVTPQERT KRKLESLEAL KKTFKKLDHD VNIREFIASG NPTVEDLSHQ  120
ARALQARLSE THRRISYWSE PEKINSIEHL GQLEISIRQS LDQLRAHKVS IPLLHVIISH  180
RVPEXRRFTL LFCCQQNLLQ MENSGLVKDW SNCLIQDGIQ IPLDQQLQSL SWIANNSSSN  240
IVTEELNLIP QRDIECSASS SFGSYSGYFG TGKSPEISIS GQETSFIDEL TGTAQLRPLA  300
NTQQFAYIPY NPNLPNDVKH QPLPPGLNLP MNQQTTDYHM NDLFESPGSS QARFGSSSSS  360
MPCSVAMFDD FFFSQLMQPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	3e-13	1	92	1	90	MEF2 CHIMERA
6byy_B	3e-13	1	92	1	90	MEF2 CHIMERA
6byy_C	3e-13	1	92	1	90	MEF2 CHIMERA
6byy_D	3e-13	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527914.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019057132.1	0.0	PREDICTED: agamous-like MADS-box protein AGL30
Swissprot	Q1PFA4	1e-167	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	D7LQC8	1e-172	D7LQC8_ARALL; Predicted protein
STRING	XP_010527914.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8754	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-145	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]