PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527865.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ZF-HD
Protein Properties Length: 316aa    MW: 35811.5 Da    PI: 7.5486
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527865.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.46.4e-3289146260
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                     ++v+YkeClkNhAa++Gg+a+DGCgEfmps geeg+++al+C+AC+CHRnFHR+eve e
  XP_010527865.1  89 QGVKYKECLKNHAAAMGGNATDGCGEFMPS-GEEGSIEALTCSACNCHRNFHRKEVEGE 146
                     679**************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-2791146IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.7E-2991143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-3192143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.54193142IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.19E-19217283IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-30218284IPR009057Homeodomain-like
TIGRFAMsTIGR015658.8E-27222278IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEISSQEDHE MPIPINSTYG GGHGHMIHHH HHDHAAPPTH NPQIPSNGNN GHGNYEHHHR  60
DQEDNPHNHH HHQQQHVGGY NIISSKKQQG VKYKECLKNH AAAMGGNATD GCGEFMPSGE  120
EGSIEALTCS ACNCHRNFHR KEVEGEAIPF PAHYHHHHLQ QPSQPRKLML THHKIRSAVP  180
HQMIMPYMST YMPPNSESDD QMEEDGGGVF PARPAPPYNN QKKRFRTKFT QEQKEKMLNF  240
AERVGWKIQR QEESVVQQFC QEVGVKRRVL KVWMHNNKHN LAKKNSSDNN DNIVNNLNLS  300
GGSNDNNPTG NLASNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-232232801875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527865.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527865.10.0PREDICTED: zinc-finger homeodomain protein 4
SwissprotQ9M9S01e-110ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A397YBW91e-109A0A397YBW9_BRACM; Uncharacterized protein
TrEMBLD7KBK31e-109D7KBK3_ARALL; ATHB31
STRINGXP_010527865.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-100homeobox protein 31