PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010527860.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 435aa MW: 49699.5 Da PI: 6.7163

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527860.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.5	1.6e-50	62	187	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ XP_010527860.1 62 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSET 155 79*************************.89***********888889************************************** PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLvfy+g+apkg +t+W+m+eyrl XP_010527860.1 156 SRPIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 187 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	56.146	61	208	IPR003441	NAC domain
SuperFamily	SSF101941	2.35E-56	61	208	IPR003441	NAC domain
Pfam	PF02365	6.1E-25	63	187	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MAVVSSTSSI ITMSNRVSNG DFHQNRNSDK GLEGDDDRRG HQDGHDDDND DDDDDHDHDL 60 VMPGFRFHPT EEELIEFYLR RKVEGKRFNV ELITFLDLYR YDPWELPAMA AIGEKEWYFY 120 VPRDRKYRNG DRPNRVTTSG YWKATGADRM IRSETSRPIG LKKTLVFYSG KAPKGIRTSW 180 IMNEYRLPHH ETEKYQKAEI SLCRVYKRPG VEDHPSLPRS LPTRHHHHHH HHHNASSSSS 240 SSRLASRQQH QSSNKNLNVN NNTSINSLEK LSAEYSGDGS TTTNTNTSTN TNNSNSDISI 300 GLVNQQQQHP MPFSTSNSMI PTMAAEDESL FINNSIDELQ RLVNYQITVG GSANNINQQY 360 YQIAQQFHQQ QQQQQQNTLN VMAAATAITP QTQAAAFAMN VIPGTFPNNA FPDRMWEMWN 420 PLPDGNRDYS NGPFK

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MAVVSSTSSI ITMSNRVSNG DFHQNRNSDK GLEGDDDRRG HQDGHDDDND DDDDDHDHDL  60
VMPGFRFHPT EEELIEFYLR RKVEGKRFNV ELITFLDLYR YDPWELPAMA AIGEKEWYFY  120
VPRDRKYRNG DRPNRVTTSG YWKATGADRM IRSETSRPIG LKKTLVFYSG KAPKGIRTSW  180
IMNEYRLPHH ETEKYQKAEI SLCRVYKRPG VEDHPSLPRS LPTRHHHHHH HHHNASSSSS  240
SSRLASRQQH QSSNKNLNVN NNTSINSLEK LSAEYSGDGS TTTNTNTSTN TNNSNSDISI  300
GLVNQQQQHP MPFSTSNSMI PTMAAEDESL FINNSIDELQ RLVNYQITVG GSANNINQQY  360
YQIAQQFHQQ QQQQQQNTLN VMAAATAITP QTQAAAFAMN VIPGTFPNNA FPDRMWEMWN  420
PLPDGNRDYS NGPFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	63	208	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	63	208	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	63	208	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	63	208	19	165	NO APICAL MERISTEM PROTEIN
4dul_A	1e-55	63	208	19	165	NAC domain-containing protein 19
4dul_B	1e-55	63	208	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527860.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527860.1	0.0	PREDICTED: NAC domain-containing protein 35-like
Swissprot	Q9ZVP8	1e-177	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A0D3E7K3	1e-179	A0A0D3E7K3_BRAOL; Uncharacterized protein
STRING	XP_010527860.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5436	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-137	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]