PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010527800.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 480aa MW: 52756.9 Da PI: 6.3653

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00012	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg sF++ ++ +H ++ XP_010527800.1 129 FECPICGSSFTSEEDVSVHVENC 151 89*****************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	3.7E-8	22	56	No hit	No description
SuperFamily	SSF143503	8.24E-17	189	271	IPR018997	PUB domain
CDD	cd09212	6.13E-21	189	273	No hit	No description
Pfam	PF09409	1.1E-16	190	264	IPR018997	PUB domain
SMART	SM00580	8.3E-18	190	257	IPR018997	PUB domain
SuperFamily	SSF54236	7.23E-13	338	451	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	3.7E-8	355	449	No hit	No description
PROSITE profile	PS50033	10.666	367	451	IPR001012	UBX domain
Pfam	PF00789	2.8E-5	368	428	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MDDMKDKLKG FMKKVNLSSS SGKFKGQGRV LGSSTSGPGG PIQSRYNPTQ APNPRPKPTP 60 SPTSSSVVSS NSASAPLPEK TLITDQQKPG SPRYTDPDPD RKPQDGFDPY GSLITSSKRS 120 QNGYSLNTFE CPICGSSFTS EEDVSVHVEN CLISGNGDNC SSVNEGSANE NKSEVQNLVA 180 VYLSSKPPES AVDVVLRLLK NIVKEPEIAK FRKIRLSNPK IKEAIGEVPG GIELLEFVGF 240 ELKEEAGEMC AVMEVPDDDR VQLVNKVVGL LEQRKVEVSK KDENSESSAP VVVAEVPAKP 300 KNIDRQIRVF FSVPESVAAR IELPDSFYSL SAEEVKREAE MRRKKMAESQ LLIPKSFKEK 360 QAKAARKRYK RTIIRVQFPD GVVLQGVFAP WEPTTALYEF VSSALKEPSL QFELLDPVLV 420 RRRVIPHSTP HGQNPRTLED EELVPAALIK FRPMETDSLL FTGLSNELLE ISEPLGSNSA

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MDDMKDKLKG FMKKVNLSSS SGKFKGQGRV LGSSTSGPGG PIQSRYNPTQ APNPRPKPTP  60
SPTSSSVVSS NSASAPLPEK TLITDQQKPG SPRYTDPDPD RKPQDGFDPY GSLITSSKRS  120
QNGYSLNTFE CPICGSSFTS EEDVSVHVEN CLISGNGDNC SSVNEGSANE NKSEVQNLVA  180
VYLSSKPPES AVDVVLRLLK NIVKEPEIAK FRKIRLSNPK IKEAIGEVPG GIELLEFVGF  240
ELKEEAGEMC AVMEVPDDDR VQLVNKVVGL LEQRKVEVSK KDENSESSAP VVVAEVPAKP  300
KNIDRQIRVF FSVPESVAAR IELPDSFYSL SAEEVKREAE MRRKKMAESQ LLIPKSFKEK  360
QAKAARKRYK RTIIRVQFPD GVVLQGVFAP WEPTTALYEF VSSALKEPSL QFELLDPVLV  420
RRRVIPHSTP HGQNPRTLED EELVPAALIK FRPMETDSLL FTGLSNELLE ISEPLGSNSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	4e-15	322	451	23	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527800.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527798.1	0.0	PREDICTED: plant UBX domain-containing protein 2 isoform X1
Refseq	XP_010527800.1	0.0	PREDICTED: plant UBX domain-containing protein 2 isoform X2
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	R0FNB3	0.0	R0FNB3_9BRAS; Uncharacterized protein
STRING	XP_010527802.1	0.0	(Tarenaya hassleriana)

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]