PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527780.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRF
Protein Properties Length: 393aa    MW: 42509.9 Da    PI: 8.965
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527780.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC81.85.9e-26147190144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCsr+v+ g+k+CErH+hrgr+rsrk++e
  XP_010527780.1 147 DPEPGRCRRTDGKKWRCSRDVVVGHKYCERHMHRGRNRSRKPVE 190
                     79***************************************987 PP
2QLQ53.19.6e-1981117137
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     s F+++Q+q+L+ Q+l+y+y++a++ vP+eLl++i+k
  XP_010527780.1  81 SFFSWNQWQELELQALIYRYMLAGAAVPQELLLPIRK 117
                     67*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-1181117IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.19582117IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.0E-1283116IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.947147191IPR014977WRC domain
PfamPF088798.5E-22148190IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDLQLKQWRR SQQQNESEEQ ASPTKTTKLV FDQSLTAATS TALPLFAPEP ETEPTSSKLS  60
SLSGFAPDSS SRSPKFVEMR SFFSWNQWQE LELQALIYRY MLAGAAVPQE LLLPIRKSLL  120
HRSPSYFLHH FSAHHQPPWY GGRAVMDPEP GRCRRTDGKK WRCSRDVVVG HKYCERHMHR  180
GRNRSRKPVE IPTPPTATTM ANAVTANAAA NVQSSFAFGR GGGGGEETGN GQSFFFSSCP  240
SQSSQLLNSS QSCSGTKTGN SSKNKRPYEA SSHRPDGGHI LRRFFDDWPR GSDGDSAAEM  300
TSSSSPMSSA ATSLTISMAG NPSSSSDVSL KLSTGNEEEE NGNNGMGNGN NGWWGGGGSG  360
GPLAEALRSS VAATSVSPTS VLHQLGITTQ SFH
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527780.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019057718.10.0PREDICTED: growth-regulating factor 3-like isoform X1
SwissprotQ9SJR51e-124GRF3_ARATH; Growth-regulating factor 3
TrEMBLM4E2R51e-137M4E2R5_BRARP; Uncharacterized protein
STRINGXP_010527788.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19262667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.17e-76growth-regulating factor 3
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  3. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  4. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]