PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527455.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 469aa    MW: 52292.3 Da    PI: 5.7057
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527455.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.42.6e-34211112101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+ye+++d++++e++sws+n+nsf+v+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k+ll++
  XP_010527455.1  21 FLLKTYEMVDDSSTDEIVSWSANKNSFIVWNHPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANECFVKDQKQLLKN 106
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     ++r+k
  XP_010527455.1 107 LHRRK 111
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-3715105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.85E-3517110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-5817110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-2921110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDDGALAISS ASGGGGGPAP FLLKTYEMVD DSSTDEIVSW SANKNSFIVW NHPEFARLLL  60
PTYFKHNNFS SFIRQLNTYG FRKIDPERWE FANECFVKDQ KQLLKNLHRR KPIHSHSQPP  120
TSIMDQERAA LKEEMDKLSC EKVAIEAKLL KSKQQKSTAK LQLEELTQQV DDMEKRQENL  180
LNFLEKAIQD PIFIEKFACK VEQLDISAYN KKRRVPQAEH SKPQSENSHL DNSSNSSRPE  240
LESIFHQSFS NKLQLELSPA VSDINLVSHS IQSSNDGGSP KGRLSGGDPK GAQTRTEGLL  300
FAPEAPELAD TGSCPRRLLL NENTQAETLP LRLTSPEETD GDFPCHLNLT LASAPLPAAK  360
TAPLITKATQ KSQDVGRFPE FNFESRESNA SAKNTAAQEA ATGKQATVAA SPARVNDVFW  420
EQFLTERPGS LDNEEASSTY RANPREEQED GRTGQMMSRN TRSIEQLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-241411019129Heat shock factor protein 1
5d5v_B2e-241411019129Heat shock factor protein 1
5d5v_D2e-241411019129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527455.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527455.10.0PREDICTED: heat stress transcription factor A-5
SwissprotQ94BZ50.0HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A178UYF40.0A0A178UYF4_ARATH; HSFA5
STRINGXP_010527455.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101342433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.10.0HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]