PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010527294.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 233aa MW: 25541.1 Da PI: 10.5034 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.7 | 6.5e-14 | 89 | 134 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT eE+ ++ + k lG+g+W+ I+r++ ++Rt+ q+ s+ qky XP_010527294.1 89 KPWTVEEHRTFLAGLKNLGKGDWRGISRKFVTTRTPTQVASHAQKY 134 58*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.548 | 8 | 21 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 15.984 | 83 | 139 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.86E-16 | 84 | 139 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-15 | 87 | 138 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.0E-10 | 87 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-10 | 89 | 134 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.1E-11 | 89 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.48E-8 | 90 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MVTAAKTCSR CGLDGHNART CVNGVNKPCV KLFGVNISDP TPFGTPLRKS LSMGNLPSLA 60 VKPAEDEPGY HSDGLTGCKK RRASRKTGKP WTVEEHRTFL AGLKNLGKGD WRGISRKFVT 120 TRTPTQVASH AQKYFIRKNN NNQRKRRASL FDIPLDDSSE GNNTDQAWTV APPTPETLAE 180 GLAQFNVLNQ CRNPSMFPQV FRYASAVPVQ MVHPSGIPVP RYIPTGIPPS QAD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010527294.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC777374 | 1e-145 | KC777374.1 Cleome spinosa KUOX1-like (At5g07480-like), hypothetical protein (At5g07490-like), and myb-like (At5g61620-like) genes, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010527294.1 | 1e-175 | PREDICTED: transcription factor MYB1R1-like | ||||
Swissprot | Q9FKF9 | 7e-80 | M5162_ARATH; Probable transcription factor At5g61620 | ||||
TrEMBL | T1SFV4 | 1e-174 | T1SFV4_9ROSI; Myb-like | ||||
STRING | XP_010527294.1 | 1e-174 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6021 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61620.1 | 2e-75 | MYB_related family protein |
Publications ? help Back to Top | |||
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