PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010527186.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Trihelix

Protein Properties

Length: 332aa MW: 38779.2 Da PI: 4.2528

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527186.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.9	4e-16	86	170	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e +L+e+ ++ +l+r++l+ +W ev++k+ +e +e+s +qC++ + nl++rykk+k+ +k + ss++++f++l+ XP_010527186.1 86 WSDHEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVsEELRVEKSETQCRSMMVNLKGRYKKEKTKLEK-SGLGSSKWVFFNKLD 170 ***********************************788999*********************99.589999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.9E-20	84	171	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MYSRPIPKRH AYYREEEDDD EEEEDEELNE YPEQNDDEED DAPQGYSRKF GSCEGLERFP 60 KRQKQSKPIS GYEFAGPSDS KLAQHWSDHE AFVLLEVWGD RFLQLGRRSL RNEDWNEVAE 120 KVSEELRVEK SETQCRSMMV NLKGRYKKEK TKLEKSGLGS SKWVFFNKLD MLLGPSSRSD 180 SGLACGVDSG EFVFMNTRVY LDKSNGFDEM MDSPGDSEMG DEDEEEDDAV EDRRRKVVDS 240 GSYRLLADSV QRFGKIYEKI ENSKREHMRE LEKMRTDFQR ELELQKKQIV ERAQAEIAKI 300 REENDDGEED DDDHDDSEPE EMDNDSATNL SE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527186.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527185.1	0.0	PREDICTED: trihelix transcription factor ASIL2 isoform X1
Refseq	XP_010527186.1	0.0	PREDICTED: trihelix transcription factor ASIL2 isoform X2
Refseq	XP_010527187.1	0.0	PREDICTED: trihelix transcription factor ASIL2 isoform X2
TrEMBL	A0A087HCA4	1e-138	A0A087HCA4_ARAAL; Uncharacterized protein
STRING	XP_010527185.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-129	Trihelix family protein