PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010527185.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Trihelix

Protein Properties

Length: 355aa MW: 41496.1 Da PI: 4.3004

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527185.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.8	4.5e-16	109	193	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e +L+e+ ++ +l+r++l+ +W ev++k+ +e +e+s +qC++ + nl++rykk+k+ +k + ss++++f++l+ XP_010527185.1 109 WSDHEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVsEELRVEKSETQCRSMMVNLKGRYKKEKTKLEK-SGLGSSKWVFFNKLD 193 ***********************************788999*********************99.589999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.5E-20	107	194	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MGDSEDDARY PKKIYSLNRQ NHPMYSRPIP KRHAYYREEE DDDEEEEDEE LNEYPEQNDD 60 EEDDAPQGYS RKFGSCEGLE RFPKRQKQSK PISGYEFAGP SDSKLAQHWS DHEAFVLLEV 120 WGDRFLQLGR RSLRNEDWNE VAEKVSEELR VEKSETQCRS MMVNLKGRYK KEKTKLEKSG 180 LGSSKWVFFN KLDMLLGPSS RSDSGLACGV DSGEFVFMNT RVYLDKSNGF DEMMDSPGDS 240 EMGDEDEEED DAVEDRRRKV VDSGSYRLLA DSVQRFGKIY EKIENSKREH MRELEKMRTD 300 FQRELELQKK QIVERAQAEI AKIREENDDG EEDDDDHDDS EPEEMDNDSA TNLSE

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MGDSEDDARY PKKIYSLNRQ NHPMYSRPIP KRHAYYREEE DDDEEEEDEE LNEYPEQNDD  60
EEDDAPQGYS RKFGSCEGLE RFPKRQKQSK PISGYEFAGP SDSKLAQHWS DHEAFVLLEV  120
WGDRFLQLGR RSLRNEDWNE VAEKVSEELR VEKSETQCRS MMVNLKGRYK KEKTKLEKSG  180
LGSSKWVFFN KLDMLLGPSS RSDSGLACGV DSGEFVFMNT RVYLDKSNGF DEMMDSPGDS  240
EMGDEDEEED DAVEDRRRKV VDSGSYRLLA DSVQRFGKIY EKIENSKREH MRELEKMRTD  300
FQRELELQKK QIVERAQAEI AKIREENDDG EEDDDDHDDS EPEEMDNDSA TNLSE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527185.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527185.1	0.0	PREDICTED: trihelix transcription factor ASIL2 isoform X1
TrEMBL	A0A087HCA4	1e-154	A0A087HCA4_ARAAL; Uncharacterized protein
STRING	XP_010527185.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-145	Trihelix family protein