PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527183.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 268aa    MW: 31146.2 Da    PI: 9.831
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527183.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.58.7e-201562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEdell+++v+ +G g+W+++a+  g++R +k+c++rw +yl
   XP_010527183.1 15 RGPWTAEEDELLIQYVRVHGEGRWNSVAKLAGLKRNGKSCRLRWVNYL 62
                     89********************************************97 PP
2Myb_DNA-binding491.4e-1568111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg  T+ E+ ++++++ ++G++ W+tIar ++ gRt++++k++w++
   XP_010527183.1  68 RGQITPREETIILELHSKWGNR-WSTIARSLP-GRTDNEIKNYWRT 111
                      7888******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.211066IPR017930Myb domain
SuperFamilySSF466895.24E-3113109IPR009057Homeodomain-like
SMARTSM007174.5E-171464IPR001005SANT/Myb domain
PfamPF002492.5E-181562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-241669IPR009057Homeodomain-like
CDDcd001671.51E-121762No hitNo description
SMARTSM007176.5E-1467115IPR001005SANT/Myb domain
PROSITE profilePS5129419.17967117IPR017930Myb domain
PfamPF002492.1E-1368111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2370116IPR009057Homeodomain-like
CDDcd001677.28E-1072111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSWGMMGTVE EGWRRGPWTA EEDELLIQYV RVHGEGRWNS VAKLAGLKRN GKSCRLRWVN  60
YLRPDLKRGQ ITPREETIIL ELHSKWGNRW STIARSLPGR TDNEIKNYWR TRFKKKKKSP  120
PNNVEKAKKN RLLKRQQFQQ QMQQQQQQQQ QLFQFNQLDM KKIISLLQDN NSGDSSSNCA  180
VYVPQMAPTT AITSAYSLNT TEEQLEGHCN RPNNGYWPDE APVIEDNGLW WDGSWNLLDG  240
NFGMSPATET CDARKAYFHN LVTPFLLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261511627127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527183.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527183.10.0PREDICTED: myb-related protein 305-like
TrEMBLR0GP771e-113R0GP77_9BRAS; Uncharacterized protein
STRINGXP_010527183.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.18e-94myb domain protein 79