PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010527164.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | Nin-like | ||||||||
Protein Properties | Length: 240aa MW: 28052.3 Da PI: 10.7794 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83.8 | 1.6e-26 | 103 | 152 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++s+e+l+kyF+lpi +A+ +L+v++TvLKr+CR++GI+RWPhRkiksl XP_010527164.1 103 ARLSIEELAKYFDLPISEASTKLNVGVTVLKRKCREFGIPRWPHRKIKSL 152 689*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.565 | 87 | 172 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.7E-22 | 105 | 152 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDRNPKLRAI PTLANELWMV SKRATRPKRK ETSHIPTKEH HGAGRNSSDE PKLRKNVLKQ 60 DLNCLPDPET TSGEESRSDQ TEQQESDIMK TDKKKRAPSK HVARLSIEEL AKYFDLPISE 120 ASTKLNVGVT VLKRKCREFG IPRWPHRKIK SLISLILDLQ GEAERQREKD ETAAMAVKRR 180 KKMLEIEKKE IEEKPFMEIQ AETKRFRQDI FKRRHRATRL LRSEDSESVR GSGTFMRMRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010527164.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010527164.1 | 1e-175 | PREDICTED: protein RKD5 | ||||
Swissprot | O81791 | 1e-76 | RKD5_ARATH; Protein RKD5 | ||||
TrEMBL | A0A1P8B478 | 1e-74 | A0A1P8B478_ARATH; RWP-RK domain-containing protein | ||||
STRING | XP_010527164.1 | 1e-175 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12049 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 6e-64 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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