PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010527122.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 214aa MW: 24873.7 Da PI: 7.9042 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 84.4 | 1.3e-26 | 25 | 77 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 rYkeC+kN Aas+G ha+DGCgEfmp e+ ++++ kC+ CgCHRnFHR+e + XP_010527122.1 25 SRYKECMKNYAASMGRHATDGCGEFMPC--EDPSSDSYKCSVCGCHRNFHRKEIQ 77 69*************************9..45679*****************976 PP | |||||||
2 | Homeobox | 16.8 | 1.2e-05 | 148 | 204 | 1 | 53 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 rr Rt+ft+eq + ++++ e + ++++a++ e +++g++ r+ +vW +N ++ XP_010527122.1 148 RRIRTKFTQEQKDKMQSFAEkaewRMQKLDASTVELFCQEIGIERRVLRVWMHNNKY 204 789************98666777779****************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 7.0E-15 | 26 | 77 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.8E-24 | 26 | 76 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.2E-23 | 26 | 76 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.515 | 27 | 75 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-28 | 133 | 209 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.88E-19 | 138 | 208 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.908 | 145 | 209 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 2.1E-26 | 147 | 204 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 0.00323 | 148 | 210 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MGIDVTSVSP RLEDRESEKR TVMISRYKEC MKNYAASMGR HATDGCGEFM PCEDPSSDSY 60 KCSVCGCHRN FHRKEIQCSD CSYSSFTQHN CHHAQFPSAL FDRSDHHANG LSTHSHYNIL 120 RCPNKSGSSD YNEEQDGQEK EVAPKQKRRI RTKFTQEQKD KMQSFAEKAE WRMQKLDAST 180 VELFCQEIGI ERRVLRVWMH NNKYHFAKKS DEAN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-18 | 148 | 203 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010527122.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010527122.2 | 1e-162 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 4e-49 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A061DJE2 | 4e-56 | A0A061DJE2_THECC; Homeobox protein 21, putative | ||||
STRING | XP_010527122.1 | 1e-162 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-51 | homeobox protein 31 |