PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527100.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 267aa    MW: 30554.6 Da    PI: 8.8871
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527100.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171964147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed++l ++v+q+G+++W+ Ia+++  gR++k+c++rw++ 
   XP_010527100.1 19 RGHWRPAEDDKLRRLVEQFGPKNWNFIAQHLE-GRSGKSCRLRWYNQ 64
                     899*****************************.************96 PP
2Myb_DNA-binding54.42.9e-1771113145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++++T+eE+e+l++a++  G++ W++Iar ++ gRt++ +k++++
   XP_010527100.1  71 KKPFTKEEEERLIKAHRIQGNR-WASIARLFP-GRTDNAVKNHFH 113
                      689*******************.*********.**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.6191469IPR017930Myb domain
SuperFamilySSF466891.05E-2818112IPR009057Homeodomain-like
SMARTSM007171.1E-151867IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-272073IPR009057Homeodomain-like
CDDcd001677.54E-142263No hitNo description
PfamPF139214.5E-182282No hitNo description
SMARTSM007171.7E-1470118IPR001005SANT/Myb domain
PROSITE profilePS5129417.63970120IPR017930Myb domain
CDDcd001671.58E-1073113No hitNo description
Gene3DG3DSA:1.10.10.601.8E-1974118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEISRTSNNS YESAKTCQRG HWRPAEDDKL RRLVEQFGPK NWNFIAQHLE GRSGKSCRLR  60
WYNQLDPNIN KKPFTKEEEE RLIKAHRIQG NRWASIARLF PGRTDNAVKN HFHVITARRK  120
RENFSSYASS SFKWDWRSMK TSSSHSYDLP RVSNSNLGLW RCQDDNKQGP WPNSWVHTGS  180
TIASDSSLFF DVSGARKGYN HNLVILAPRN HHLGSSSVND CGRGSKEENT NREGEAYGSI  240
GEDDDDDDDE GKNNVAFFDF LGVGLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32191197107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527100.10.0PREDICTED: transcriptional activator Myb-like
TrEMBLA0A1J3INR51e-91A0A1J3INR5_NOCCA; Transcription factor MYB44 (Fragment)
STRINGXP_010527100.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.19e-95myb domain protein 69