PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526991.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 273aa    MW: 31116.3 Da    PI: 8.7471
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526991.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-171964147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l  +v+++G+++W+ Ia++++ gR++k+c++rw++ 
   XP_010526991.1 19 RGHWRPAEDEKLRFLVEKYGPKNWNFIAQHLQ-GRSGKSCRLRWYNQ 64
                     899*****************************.************96 PP
2Myb_DNA-binding521.6e-1671114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++T+eE+e+l++ ++  G++ W++Iar ++ gRt++ +k++++ 
   XP_010526991.1  71 KKPFTEEEEERLLKMHRTQGNR-WASIARLFP-GRTDNAVKNHFHV 114
                      689*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8731469IPR017930Myb domain
SMARTSM007171.1E-141867IPR001005SANT/Myb domain
SuperFamilySSF466891.68E-2918112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-272072IPR009057Homeodomain-like
CDDcd001671.22E-132263No hitNo description
PfamPF139212.2E-172282No hitNo description
PROSITE profilePS5129417.87870120IPR017930Myb domain
SMARTSM007171.0E-1470118IPR001005SANT/Myb domain
CDDcd001672.08E-1073113No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2073118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEISETSNDS FESAQTCQRG HWRPAEDEKL RFLVEKYGPK NWNFIAQHLQ GRSGKSCRLR  60
WYNQLDPNIN KKPFTEEEEE RLLKMHRTQG NRWASIARLF PGRTDNAVKN HFHVIMARRK  120
RDRFSSLASS SASFKRNWQG IATTSTSHGF LPRVDSSNFG LWRSQDVKKH ETWPGSWTYN  180
GSTVTSGSSF FDGFGARRCY SPNFSVLAPR DCHIGSTNSV SDCGHGSQEE TFRVTESTNR  240
HGEAHGKIAE HVDDHDEEGK NNVAFIDFLG VGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-34191194104MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-34191194104C-Myb DNA-Binding Domain
1msf_C7e-34191194104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526991.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526991.10.0PREDICTED: transcription factor WER-like
TrEMBLD7M8R24e-87D7M8R2_ARALL; AtMYB69
STRINGXP_010526991.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.18e-85myb domain protein 69