PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526910.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 1776aa    MW: 193125 Da    PI: 4.589
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526910.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.2e-0817521775225
                      -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH    2 ktelCrffartGtCkyGdrCkFaH 25  
                      ++++C+ff+++G+C+ G++C ++H
  XP_010526910.1 1752 GQRICKFFRENGYCRKGASCDYIH 1775
                      5799******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.3E-9662722IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579038.42E-9663720IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.823666732IPR019787Zinc finger, PHD-finger
SMARTSM002491.5E-4668730IPR001965Zinc finger, PHD-type
CDDcd155682.30E-21668713No hitNo description
PROSITE patternPS013590669729IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.103.9E-23864955IPR003121SWIB/MDM2 domain
SuperFamilySSF475922.62E-20868949IPR003121SWIB/MDM2 domain
PfamPF022014.9E-13890948IPR003121SWIB/MDM2 domain
SuperFamilySSF1590426.15E-3310091138IPR004343Plus-3 domain
PROSITE profilePS5136030.23710091141IPR004343Plus-3 domain
SMARTSM007196.0E-5110091118IPR004343Plus-3 domain
PfamPF031266.4E-2410141116IPR004343Plus-3 domain
SuperFamilySSF552775.23E-1513381390IPR003169GYF domain
CDDcd000725.54E-1513511402No hitNo description
PROSITE profilePS5082914.40613511399IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.3E-1213511384IPR003169GYF domain
SMARTSM004444.3E-1213521401IPR003169GYF domain
PfamPF022136.5E-1113531382IPR003169GYF domain
SuperFamilySSF902299.42E-517491776IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7617501776IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-517521775IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-517541776IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1776 aa     Download sequence    Send to blast
MDTDSARASM ESVQGSERVP ESNESHLSGT CGGSFDGGID VSVVPPEPSS AGSGGGGGEG  60
GAVNSAAEVS HSVDAGAVLE VVPLELSTEI GEGVRKGEGA SLSSVPEVSD SVYSGPALEI  120
VPMEPSSAID VGRREGTIFI PKERDSAIGV GDHVYGGSTV DVVPFEPCPG IGEGGEGGVT  180
ATIVQEGNSV AEINDSWLVG GEMEVEAANL PNFDWEKDYV CRDRQEKKNE FSEKDEQPAF  240
PVLRQEGVEN REEGQQEVDG RIVADDEGNG VAKGHIGAIT GSDETNAVAA MEEEDPGQVA  300
SLADNVDEGE IPDDKVLASI AGSTEILQRD KGLGDSACEL GSQLELKEPS QESHDEEVKD  360
ATDGDERGEI VVKKNAVDGQ CIQGAETEIG EKEGEEKKTD AVEREDEPMM EIETKPQEVD  420
AAEAAETETG ARIEEEQQGV VREREDVNMS NTQPRPQEMD IAPGEVAEKN VLVGQLSTDI  480
TQFAGGEGNN QETVVVDAEK MVVKDLEAGE SVRQVSESTE EVETNAENVA GMEKEGNVIG  540
GVEVAAQMVN AEVVEASEKV TEVGVTKISQ VEEKTDVRTE HEIEFQKEAD EPKDMETQGD  600
SSVADIVEDR ENREDTEMTE TQEETMMAET GEEGEDVEEE NKSIGAKRKR GRNLKQPKGS  660
AKKKEEDVCF ICFDGGDLVL CDRRGCPKAY HPSCVGRDEA FFHSKDKWNC GWHLCSKCEK  720
TATYLCHTCT FSLCKGCVKD SVFFCVRGNK GLCETCMDTV RLIESKEQEK KEPAQLDFDD  780
KSSWEYLFKD YWIDLKAQLS ITQEELDQAK SPWKRHGTQA TKPETTSKND YASDGVSDSD  840
SPPKRRKTRR QSKSGGQILS GNDKSSSGEN VEWASKELLD VVVHMRHGDR SFLPQSEVHT  900
LLLDYIKRYN LRDPRRKSQV ICDSRLQNLF GKSHVGHFEM LNLLDSHFLI KKESHAQAIR  960
STVVDTEADH VDADESLDHP MKTGKDKKRK THRKVGSRGR QSNLDDFAAI DMHNINLIYL  1020
RRSLVEDVLE DLSSFQEKVV GAFVRLRISG NQKQDLYRLV QVAGTSKAVE PYKVGKKTTD  1080
FVLEILNLDK TEVISVDIIS NQDFTEDECK RLRQSIKCGF ISRLTVGGIQ EKAIALQEVR  1140
VKNLLEGEIV RLSHLRDRAS DMGRRKELRE CVEKLQVLKS PEERQRRLEE IPEIHVDPSM  1200
DPDCESEDED EKEEKQREKY LRPRSSSFNR RGREPISPRA GGYGSSYSWG GTRNYSSENR  1260
ELSRNLSGRG FSSRGDNPAG GSGDRANESL WTSGRDRELQ QSASPEKPGS VSQSSNRVGT  1320
AELSPRVGSE ISPAPLPTSV TEPISQINES EKMWHYKDPS GKVQGPFSMV QLRKWNNTGY  1380
FPAQXETQDD SVPLADALAG RFPKQTQTGI YSVRASCPSS QSAGGGLKSE PEFGSSGRTA  1440
PSTLEIPKSQ DNTWGPSSGS GTNLPSPTPN QTTTPTATRR RSYESRWSST PAQTPVQSTV  1500
QLANSFIPPS ATNPVSARPD VPMTHVGSAM ALPSLTPAGL NQGRGTMQAK KLDSSGSTQI  1560
PSHGHIAPSS SQSSSPSFNA GTPGLFPAQF QSGIPPSDSW RVPVPIQPNT QAPVPLNLPW  1620
GMNAMNSNDQ NAPQTQAPAI QSSGWGQMPV NPNMGWMGTP QAGANPNWGS YSWGGQPQVY  1680
PNPGWGMTGQ AQAPVNTGSG NGPKTGNGNP NWGSISHGPT PGGAAAMWGN KQNQNGGGDS  1740
TAGYGWNRNL NGQRICKFFR ENGYCRKGAS CDYIHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A1e-17653735281Histone-lysine N-methyltransferase NSD3
4gnd_C1e-17653735281Histone-lysine N-methyltransferase NSD3
4gne_A1e-17653735281Histone-lysine N-methyltransferase NSD3
4gnf_A1e-17653735281Histone-lysine N-methyltransferase NSD3
4gng_A1e-17653735281Histone-lysine N-methyltransferase NSD3
4gng_D1e-17653735281Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1987991KRKTH
Functional Description ? help Back to Top
Source Description
UniProtPlays a central role in integrating RNA silencing and chromatin signals in 21 nt siRNA-dependent DNA methylation on cytosine pathway leading to transcriptional gene silencing of specific sequences. Involved in a chromatin-based RNA silencing pathway that encompasses both post-transcriptional gene silencing (PTGS) (e.g. RDR1, RDR6 and AGO2) and transcriptional gene silencing (TGS) (e.g. siRNA-dependent DNA methylation and histone H3) components. Mediates siRNA accumulation at specific chromatin loci. Binds H3K4me0 through its PHD to enforce low levels of H3K4 methylation and gene silencing at a subset of genomic loci. {ECO:0000269|PubMed:22940247}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0070471e-33AC007047.7 Arabidopsis thaliana chromosome 2 clone F16F14 map mi398, complete sequence.
GenBankCP0026851e-33CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019056896.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 19-like
SwissprotQ9SIV50.0C3H19_ARATH; Zinc finger CCCH domain-containing protein 19
TrEMBLA0A1J3IAY20.0A0A1J3IAY2_NOCCA; Zinc finger CCCH domain-containing protein 19
STRINGXP_010526910.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54221620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding