PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010526781.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 289aa MW: 31188.3 Da PI: 7.0495 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 105.8 | 7.4e-33 | 81 | 139 | 3 | 61 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaass 61 s t+sC+dCGnqakk+Cah+RCRtCCksrgfdCathv+stW+p+akrrerqqq+ a++ XP_010526781.1 81 SVTISCRDCGNQAKKGCAHMRCRTCCKSRGFDCATHVRSTWIPVAKRRERQQQTMATEG 139 6789**********************************************999887654 PP | |||||||
2 | DUF702 | 82.3 | 1.2e-25 | 150 | 209 | 95 | 154 |
DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s++ + s+P+ev+seavfrcvr+s+vdd++ ++aYqt ++i+GhvfkGiLydqG+++ XP_010526781.1 150 ASSTDMGEPSFPAEVNSEAVFRCVRMSGVDDENGQYAYQTMMNINGHVFKGILYDQGPQS 209 4566777888***********************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.0E-54 | 83 | 208 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.9E-26 | 85 | 127 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 5.3E-26 | 160 | 207 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0048479 | Biological Process | style development | ||||
GO:0048480 | Biological Process | stigma development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 289 aa Download sequence Send to blast |
MAGIFPLGSG RGNEEEDQRK TGLWFRNTNP SASSSDNQQI WQLEQEPPPQ QMFMQQQQQQ 60 SLDLYPAGQI DVSDLATSWR SVTISCRDCG NQAKKGCAHM RCRTCCKSRG FDCATHVRST 120 WIPVAKRRER QQQTMATEGG ANIPKRPRDA SSTDMGEPSF PAEVNSEAVF RCVRMSGVDD 180 ENGQYAYQTM MNINGHVFKG ILYDQGPQSS HNISCGSGGS DHQSSSAGIG AGGNPFNPAA 240 AAAGASSSHA VAGGSSSPMF VDPSAYYGSS NLSMFMPAGT QFYNQNPRS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010526781.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010526781.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 2-like isoform X2 | ||||
Swissprot | O65517 | 3e-93 | SRS2_ARATH; Protein SHI RELATED SEQUENCE 2 | ||||
TrEMBL | V4ME11 | 1e-103 | V4ME11_EUTSA; Uncharacterized protein | ||||
STRING | XP_010526782.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36260.1 | 6e-76 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
---|---|---|---|
|