PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010526752.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 314aa MW: 33610.1 Da PI: 6.9543

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010526752.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	77.7	1.5e-24	226	288	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+Ar+sR+RK+ae+e+L+++v++L +eN+ L++el++l++e++klk+e+ XP_010526752.1 226 ERELKRQKRKQSNRESARKSRLRKQAECEQLQQRVESLANENHGLREELQRLSEECEKLKTEN 288 89**********************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	3.6E-27	1	92	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF15136	2.6E-6	168	296	IPR028227	Uncharacterised protein family UPF0449
Gene3D	G3DSA:1.20.5.170	2.7E-20	221	286	No hit	No description
Pfam	PF00170	1.6E-22	226	288	IPR004827	Basic-leucine zipper domain
SMART	SM00338	8.2E-22	226	290	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.53	228	291	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.52E-11	229	285	No hit	No description
CDD	cd14702	6.31E-22	231	281	No hit	No description
PROSITE pattern	PS00036	0	233	248	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGTVEESTPS KPSKPASSTQ ELPSTPYPDW SSSMQAYYGA GGTPAPFFPS PVASPYPYMW 60 GAQHHMMSPY GTPVPYPALY PPGGGYAHPT MPMALNSAPA NAESAKDQAS AKKTKGNTRG 120 KGEGSEKVAS GSDNDDVSQS DDSATEGSSE GNNENLNKQE QGSSRKGSFE QMLADVQGSL 180 PMKPVAPATN LNMGMELWSS GAGGAAKMRP NTPGANVPAP EQWIDERELK RQKRKQSNRE 240 SARKSRLRKQ AECEQLQQRV ESLANENHGL REELQRLSEE CEKLKTENNS IKASIEKTAM 300 SGGGTKEGKA NGLS

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010526752.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010526752.1	0.0	PREDICTED: G-box-binding factor 1-like isoform X4
Swissprot	P42774	1e-134	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A1J3DZ24	1e-141	A0A1J3DZ24_NOCCA; G-box-binding factor 1
STRING	XP_010526749.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.1	2e-90	G-box binding factor 1

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]