PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010526699.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | GRF | ||||||||
Protein Properties | Length: 507aa MW: 54615.8 Da PI: 8.3882 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.3 | 1.5e-24 | 206 | 250 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+ XP_010526699.1 206 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVES 250 79****************************************985 PP | |||||||
2 | QLQ | 47.3 | 6.2e-17 | 140 | 176 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+++L++Q+l+yKy+ an vPp Ll+ ++k XP_010526699.1 140 GPFTLMQWAELEQQALIYKYITANIHVPPSLLLSLKK 176 59******************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.0E-8 | 140 | 176 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.771 | 141 | 176 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.2E-11 | 141 | 173 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 26.207 | 206 | 250 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.2E-21 | 207 | 249 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MDLGVRGQGF VSGHEDGAPT HSELGSGFAR QDGSGFGGED YWRSSKLART EDLSGCKTLS 60 FHQGIPLLRS TSLISSDPSR QESMLSFSSD KSEALDFSKD GGLVNKSHLS PYLQQLPSSY 120 SRNAGMMNTA MHGNFTGVGG PFTLMQWAEL EQQALIYKYI TANIHVPPSL LLSLKKSFYP 180 YAPGSLPPNS FGWGSFHLGF SGGNMDPEPG RCRRTDGKKW RCSRDAVPDQ KYCERHINRG 240 RHRSRKPVES HSGHTAAGST TSKAVTPSSV AVDRGRGQAN PSTDPLANRV QNSRGASIFP 300 PTISLQPKES PAAPQKQENP FEFGFISSDS WPNPSQKPPS MDSAKGFGSY LDFTSQEKQN 360 SSNQNIVSWP EELKPDWTQL SMSIPMASAS SSPSLSPLRL SREFDPAIQM GLGVNCEVTE 420 PVKKVSNWIP ISWGNSLGGP LGEMLNSTSN SPKLGSSPTG VLQKSSFCSL SNSSSGSSPV 480 PVGGQNKKGG DRDGLCEDLL LNCENNK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010526699.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010526699.1 | 0.0 | PREDICTED: growth-regulating factor 1-like isoform X2 | ||||
Swissprot | O81001 | 0.0 | GRF1_ARATH; Growth-regulating factor 1 | ||||
TrEMBL | A0A087GSD1 | 0.0 | A0A087GSD1_ARAAL; Uncharacterized protein | ||||
STRING | XP_010526698.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 1e-174 | growth-regulating factor 1 |
Publications ? help Back to Top | |||
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